K11010

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	flower (PO:0009046)	abnormal (PATO:0000460) (Flower::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11010

Determination of introduced cDNA(s)

J013134E19 - Rice Full-length cDNAs - Original: J013134E19

full reading [+] show sequence

GATGTACTCC TGTTTCCCCC AATTCCTTCC CACCACCGGC CACCTCTAGC 
GTATCGCCTG GTCCTTCCAT GCCATGCCTG CTGGTCCCCC AACCCCCCAT 
CTCCAAGCTC TTTCTCTCCC TGCTGGCTCC CCATCTTCAC CTCGTGGCGG 
CATCTGGTCA TGCACCTCGG CCACAGCGCA GCTCGAGCAG TCGACGGGGT 
GGAGTGGCCT CGGCAGCGGC ACGGATTGGA CTCGGCGACG GTGGTATACT 
TCCGGTCAGT CTCTCGTCCG GATCTACTTC CGACAAGCCT CTCGTCCGGA 
TCTAGGGCCT TGCAGCGGTA ATCACTGGAT CTGGGGTCTC CGCGGCTGGA 
TGCCCTCTCC TGCTTCGTCG TTGCGGTGGC AATCACCAGA TCTGGGGCCT 
CTGCGCCTGG ATTCGGTTGA TGGGAGTTTT GGAGCGAGGA TGGAGGTGTG 
TTTGAGAATA ATCACCCCTC GTCTGCTGAC TCGTCCCCAT CGCCCGACCG 
GTCCACGGGG TTCCAGGCAA CATGCATCGC GGCGTCTCGG CATGGAGGGT 
GCACAGTGTT GGGGTTCAGC TACGGCAGCT TCGTGGTGTT CGTTGCCTGC 
TGTGGGGTGC TTTGTGTTGT GGATAGTGGG CGTGGACCAG AAGCTGATTA 
TGTGTTTTCA CCGCGCGAAA TTGGATCCAA GAGTGGGGAT GGTGATGCAG 
ATGGCGTGGT ACCAGCATCA AGCATGTGTG ATGGAGCTGT GCATTTATAT 
TGTGATAGGA ACTCAGAAAC TTCAACTACC AAGACAGGAG ATCAAGATGT 
CTAGAATGGC ATTGTGAATT TGTGATCCTC AATACAATTG AAGTTGTTCA 
CGGAGCTGCT CTTGGCACGA TGGCTTCTTT GGTGATGGAG CAGAGCTCTT 
AGAATGTCTT TTGATCACAC CACAAGAACG AATTTTATTT GTGGTACCAG 
TTTTGTTTGT ATATATAGGA GGATAGGATG TATGCAGCGT TCTTGTGGTG 
TTCGGATGTA AAATTGGGGG TTCTTTTGGT GTTCGGAGAG CGATTTGGGT 
GGGAATCGGA GTCGGAAAAA AAATTGCTAC GGATGCGATC TGAGAAAGAG 
AAAAAAACCG TGCGGGG

Gene models with high sequence identity

Not founds.

InterPro Scan Digest

See the detailed result >

J023049L24 - Rice Full-length cDNAs - Original: J023049L24

full reading [+] show sequence

GGAGACCTCC TCGCGAGTCG TCAATCCATG GCCGCCTCCG CGTCGGCGTC 
GCTGCGCCAC CACCTCCTCC TCCGCCGCCG CCCGCGCTTC CCCCTCGGCC 
CTAGCCCCAC TTTCCGCACC TCCTCCCTAC CCCGCCGCCA CCAGCGGCTC 
TTCGCCTCTG CCCCATCCTC GTCGACGGTG GAGAATGGCG AGCCCTCCTC 
GCCGGTGGAG CCGTCCGACG GTGCGTCCGT CGTCGACGTG AATCCGCCGC 
GCGGGACCAG GGATTTCCCC CCGGAGGACA TGCGCCTCCG CACCTGGCTC 
TTCGACCAGT TCAGGGAGGT GTCCCGCGTC ATGGCGTTTG AGGAGGTGGA 
CTTCCCAGTG CTCGAGTCTG AGGCGCTCTT CATTCGCAAG GCCGGAGAGG 
AGATCACGCA GCAGCTTTAT AACTTCGAGG ATAAAGGAGG GCGCCGTGTT 
GTTCTGAGGC CTGAAATCAC CCCTTCCTTG GCACGCCTAG TTATAAAGCA 
AGGAAAATCA GTCTCCCTTC CACTGAAATG GTTTACTATA GGACAATGCT 
GGCGATATGA GCGTATGACA AGAGGAAGAC GGCGTGAACA TTATCAATGG 
AACATGGATA TTTTTGGCAT GCCTAAAGTT CGAGCAGAGT CTGAGCTTCT 
TCAAGCTATT ATTCTCTTAT TTGAACGTCT TGGGATTACA TCTTCAGATG 
TGGGGATCAG AGTGTCCAGC CGAAAGGTCC TTCAGGCTGT GTTGAATATG 
TACTCCATTC CAGAACATTT GTTTACTGAA GTTTGTGTGA TTGTTGATAA 
ACTGGGAAAG CTGACTAGAG AAGAAATTGA GAAGAAGTTG GTTACAATTG 
GGCTGTCATC TGAAGCTGTG CTGGGTATCA TTGAGGTTCT TTCTCTCAAG 
TCGCTACCCA AGCTTGAAGA GGTGCTAGGC TCTGATGTTG AAGCTGTTGC 
TGACTTGAAG AAGTTGTTCT CGTTTGCTGA GCAGTACGGT TATGCTGATT 
GGATTTGTTT TGATGCATCT GTTGTTCGTG GCCTTGCATA CTACACAGGA 
ATTGTTTTTG AGGCTTTTGA TAGAGATGGA AAACTGAGAG CAATTTGTGG 
TGGAGGAAGG TATGATAGAC TACTTTCAAC ATTTGGTAGT GAAGACATAC 
CAGCTTGCGG TTTTGGATTT GGAGACGCTG TTATAGTGGA ACTGCTGAAA 
GAAAAGGGTC TGTTACCTGA TCTGTCACGC CAAATAGATG ACATTGTCTT 
CCCATTGGAT GAGGAGCTTG AAGGGCCAGC ATGTAGTGTT GCTTCCTCTC 
TGCGGAGGCA AGGCAGAAGT GTAGACCTTG TTGAAGACAA GCGTCTTAAA 
TGGGTATTTA AGCATGCTGA GAGGATAAAT GCTGGTAGGC TGATATTGGT 
CGGAAAATCC GAGTGGGAGC GAGGTATGGT TCGTGTGAAG ATATTATCAA 
CCAGAGAAGA ATTTGAGGTC AAGGCTGGCG AACTACAATA AGAGAATTTG 
TGAAGGTTTT GCTTCTAATC CTAGGCCTTT TTACCTTCTT TATGACTTCA 
TCCACTAAAG CTCTGTTGAA ACACAGCGAT TCATGTCATT CACACATAGG 
AGGGGTACAA CTCGTAGGCA CTCCATTATT TTACTGATAG AATGCCTTTA 
TTTGCTACTA GATGATTTAC ACGTTTGCCG AAGGTGATTG TATCTTCGTT 
TGCAGATACC CTTACACTAT AGAGTTCAGG AGTAAATAAA CTGCAGAATA 
CATAACTGCC

Gene models with high sequence identity

AT3G46100.1 [+] show detail - Histidyl-tRNA synthetase 1
E-value: 1e-163; Score: 573.00

InterPro Scan Digest

Program	Description	E-value
HAMAP	Histidyl-tRNA synthetase, class IIa, subgroup	24.475
Gene3D	no description	2.5e-83
Gene3D	Anticodon-binding	2.7e-10
HMMPIR	Histidyl-tRNA synthetase, class IIa	3.2e-140
superfamily	Class II aaRS and biotin synthetases	4.9e-72
superfamily	Anticodon-binding	8.3e-15
ProfileScan	Aminoacyl-tRNA synthetase, class II, conserved domain	13.777
HMMTigr	Histidyl-tRNA synthetase, class IIa, subgroup	5.9e-113
HMMPanther	Histidyl-tRNA synthetase, class IIa	4.1e-124
HMMPfam	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	1.7e-20
HMMPfam	Anticodon-binding	6.4e-08

See the detailed result >

AT3G46100.1

Model type: Protein coding
Short Description: Histidyl-tRNA synthetase 1
Curator Summary: histidyl-tRNA synthetase
Computational Description: Histidyl-tRNA synthetase 1 (HRS1); FUNCTIONS IN: histidine-tRNA ligase activity; INVOLVED IN: histidyl-tRNA aminoacylation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidyl-tRNA synthetase, class IIa, subgroup (InterPro:IPR015807), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Anticodon-binding (InterPro:IPR004154), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Histidyl-tRNA synthetase, class IIa (InterPro:IPR004516); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT5G03406.1); Has 12183 Blast hits to 12140 proteins in 2982 species: Archae - 258; Bacteria - 7725; Metazoa - 293; Fungi - 147; Plants - 90; Viruses - 0; Other Eukaryotes - 3670 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J033046F10 - Rice Full-length cDNAs - Original: J033046F10

full reading [+] show sequence

GATCCAGAAT CAGATCCACA AGGCAGCAGC TGCAGCAGCA TCGACCATGG 
CGATGGCGCG ATCCATCCTC CTCCTCCTCC TCCTCGCCGC CGCCGCCTCC 
GCCTCCGCCG ACGCGCCCTT CCTCGTCGCG CACAAGAAGG TTTCGCTCTC 
CCGCCCCAAG CCTGGCGTCG AGCGCCTCGC CGTCTCCCTC GACCTCTACA 
ACCAGGGATC CGCAACTGCC TATGATGTGA GCATTAATGA TGATACTTGG 
CCAAAGGAGG CATTTGAGCT TGTCTCTGGA GAGATGTCAA AGACATTGGA 
AAGGCTTGAC CCTGGTGTCA CTGCTTCGCA TGCATTTGTC TTGGAGACCA 
AAGTACAGGG CATGTTTCAG GTTCACCTGC GGTTATTACC TATCGTGTTC 
CCACAAAGGC TGCGCTTCAG GAGGCCTATT CAACCCCCAT CCTTGCACTT 
GATGTTCTTG CTGAGAGGCC TCCAGAAAAG AAGTTTGAAT GGGCTAAGAG 
GCTTGTGGCG AAGTACGGGT CGCTGGTGTC CGTTGTTGGC TTGGTTGGAG 
TGTTTATCTA CCTGGTTGCA AGCCCGTCAA AATCCAGCGG TGCAAAAGCA 
AGCAAGAAGA GGCGTTGATA TACTTGCCTA CCATATATAA GGCAGTGTTT 
GTTCTTTTTT ATTAAAAAGA GGAAGAGATG GTGGCAGGTT TTTTAGATTG 
ATAGCGCGAG AGCTTTAAGG CTGCCGCATC CTTGAACTGT ATGAATTTTC 
TCTGTTTGTG TTTTTGGAAG TTGAAAACCT AACCCAGAGA ATTGGAGAGT 
AGATTTTGTA ACAGATGAAA TCTCAATGCA TCATTTTGAA GTTGCCTGAT 
ACAGATACCT ATTCATTGCA TTTGGTAACA GATGAAATCC C

Gene models with high sequence identity

AT5G14030.4 [+] show detail - translocon-associated protein beta (TRAPB) family protein
E-value: 2e-20; Score: 96.70

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Translocon-associated beta	1.9e-15
HMMPfam	Translocon-associated beta	1.5e-34
HMMPanther	Translocon-associated beta	1.5e-21

See the detailed result >

AT5G14030.4

Model type: Protein coding
Short Description: translocon-associated protein beta (TRAPB) family protein
Computational Description: translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR