K11010

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11010

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11010

Determination of introduced cDNA(s)

  • J013134E19 - Rice Full-length cDNAs - Original: J013134E19

    full reading [+] show sequence

    Nucleotide sequence: J013134E19 - full reading
    GATGTACTCC TGTTTCCCCC AATTCCTTCC CACCACCGGC CACCTCTAGC 
    GTATCGCCTG GTCCTTCCAT GCCATGCCTG CTGGTCCCCC AACCCCCCAT
    CTCCAAGCTC TTTCTCTCCC TGCTGGCTCC CCATCTTCAC CTCGTGGCGG
    CATCTGGTCA TGCACCTCGG CCACAGCGCA GCTCGAGCAG TCGACGGGGT
    GGAGTGGCCT CGGCAGCGGC ACGGATTGGA CTCGGCGACG GTGGTATACT
    TCCGGTCAGT CTCTCGTCCG GATCTACTTC CGACAAGCCT CTCGTCCGGA
    TCTAGGGCCT TGCAGCGGTA ATCACTGGAT CTGGGGTCTC CGCGGCTGGA
    TGCCCTCTCC TGCTTCGTCG TTGCGGTGGC AATCACCAGA TCTGGGGCCT
    CTGCGCCTGG ATTCGGTTGA TGGGAGTTTT GGAGCGAGGA TGGAGGTGTG
    TTTGAGAATA ATCACCCCTC GTCTGCTGAC TCGTCCCCAT CGCCCGACCG
    GTCCACGGGG TTCCAGGCAA CATGCATCGC GGCGTCTCGG CATGGAGGGT
    GCACAGTGTT GGGGTTCAGC TACGGCAGCT TCGTGGTGTT CGTTGCCTGC
    TGTGGGGTGC TTTGTGTTGT GGATAGTGGG CGTGGACCAG AAGCTGATTA
    TGTGTTTTCA CCGCGCGAAA TTGGATCCAA GAGTGGGGAT GGTGATGCAG
    ATGGCGTGGT ACCAGCATCA AGCATGTGTG ATGGAGCTGT GCATTTATAT
    TGTGATAGGA ACTCAGAAAC TTCAACTACC AAGACAGGAG ATCAAGATGT
    CTAGAATGGC ATTGTGAATT TGTGATCCTC AATACAATTG AAGTTGTTCA
    CGGAGCTGCT CTTGGCACGA TGGCTTCTTT GGTGATGGAG CAGAGCTCTT
    AGAATGTCTT TTGATCACAC CACAAGAACG AATTTTATTT GTGGTACCAG
    TTTTGTTTGT ATATATAGGA GGATAGGATG TATGCAGCGT TCTTGTGGTG
    TTCGGATGTA AAATTGGGGG TTCTTTTGGT GTTCGGAGAG CGATTTGGGT
    GGGAATCGGA GTCGGAAAAA AAATTGCTAC GGATGCGATC TGAGAAAGAG
    AAAAAAACCG TGCGGGG

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >

  • J023049L24 - Rice Full-length cDNAs - Original: J023049L24

    full reading [+] show sequence

    Nucleotide sequence: J023049L24 - full reading
    GGAGACCTCC TCGCGAGTCG TCAATCCATG GCCGCCTCCG CGTCGGCGTC 
    GCTGCGCCAC CACCTCCTCC TCCGCCGCCG CCCGCGCTTC CCCCTCGGCC
    CTAGCCCCAC TTTCCGCACC TCCTCCCTAC CCCGCCGCCA CCAGCGGCTC
    TTCGCCTCTG CCCCATCCTC GTCGACGGTG GAGAATGGCG AGCCCTCCTC
    GCCGGTGGAG CCGTCCGACG GTGCGTCCGT CGTCGACGTG AATCCGCCGC
    GCGGGACCAG GGATTTCCCC CCGGAGGACA TGCGCCTCCG CACCTGGCTC
    TTCGACCAGT TCAGGGAGGT GTCCCGCGTC ATGGCGTTTG AGGAGGTGGA
    CTTCCCAGTG CTCGAGTCTG AGGCGCTCTT CATTCGCAAG GCCGGAGAGG
    AGATCACGCA GCAGCTTTAT AACTTCGAGG ATAAAGGAGG GCGCCGTGTT
    GTTCTGAGGC CTGAAATCAC CCCTTCCTTG GCACGCCTAG TTATAAAGCA
    AGGAAAATCA GTCTCCCTTC CACTGAAATG GTTTACTATA GGACAATGCT
    GGCGATATGA GCGTATGACA AGAGGAAGAC GGCGTGAACA TTATCAATGG
    AACATGGATA TTTTTGGCAT GCCTAAAGTT CGAGCAGAGT CTGAGCTTCT
    TCAAGCTATT ATTCTCTTAT TTGAACGTCT TGGGATTACA TCTTCAGATG
    TGGGGATCAG AGTGTCCAGC CGAAAGGTCC TTCAGGCTGT GTTGAATATG
    TACTCCATTC CAGAACATTT GTTTACTGAA GTTTGTGTGA TTGTTGATAA
    ACTGGGAAAG CTGACTAGAG AAGAAATTGA GAAGAAGTTG GTTACAATTG
    GGCTGTCATC TGAAGCTGTG CTGGGTATCA TTGAGGTTCT TTCTCTCAAG
    TCGCTACCCA AGCTTGAAGA GGTGCTAGGC TCTGATGTTG AAGCTGTTGC
    TGACTTGAAG AAGTTGTTCT CGTTTGCTGA GCAGTACGGT TATGCTGATT
    GGATTTGTTT TGATGCATCT GTTGTTCGTG GCCTTGCATA CTACACAGGA
    ATTGTTTTTG AGGCTTTTGA TAGAGATGGA AAACTGAGAG CAATTTGTGG
    TGGAGGAAGG TATGATAGAC TACTTTCAAC ATTTGGTAGT GAAGACATAC
    CAGCTTGCGG TTTTGGATTT GGAGACGCTG TTATAGTGGA ACTGCTGAAA
    GAAAAGGGTC TGTTACCTGA TCTGTCACGC CAAATAGATG ACATTGTCTT
    CCCATTGGAT GAGGAGCTTG AAGGGCCAGC ATGTAGTGTT GCTTCCTCTC
    TGCGGAGGCA AGGCAGAAGT GTAGACCTTG TTGAAGACAA GCGTCTTAAA
    TGGGTATTTA AGCATGCTGA GAGGATAAAT GCTGGTAGGC TGATATTGGT
    CGGAAAATCC GAGTGGGAGC GAGGTATGGT TCGTGTGAAG ATATTATCAA
    CCAGAGAAGA ATTTGAGGTC AAGGCTGGCG AACTACAATA AGAGAATTTG
    TGAAGGTTTT GCTTCTAATC CTAGGCCTTT TTACCTTCTT TATGACTTCA
    TCCACTAAAG CTCTGTTGAA ACACAGCGAT TCATGTCATT CACACATAGG
    AGGGGTACAA CTCGTAGGCA CTCCATTATT TTACTGATAG AATGCCTTTA
    TTTGCTACTA GATGATTTAC ACGTTTGCCG AAGGTGATTG TATCTTCGTT
    TGCAGATACC CTTACACTAT AGAGTTCAGG AGTAAATAAA CTGCAGAATA
    CATAACTGCC

    Gene models with high sequence identity

    1. AT3G46100.1 [+] show detail - Histidyl-tRNA synthetase 1
      E-value: 1e-163; Score: 573.00

     

    InterPro Scan Digest

    Program Description E-value
    HAMAP Histidyl-tRNA synthetase, class IIa, subgroup 24.475
    Gene3D no description 2.5e-83
    Gene3D Anticodon-binding 2.7e-10
    HMMPIR Histidyl-tRNA synthetase, class IIa 3.2e-140
    superfamily Class II aaRS and biotin synthetases 4.9e-72
    superfamily Anticodon-binding 8.3e-15
    ProfileScan Aminoacyl-tRNA synthetase, class II, conserved domain 13.777
    HMMTigr Histidyl-tRNA synthetase, class IIa, subgroup 5.9e-113
    HMMPanther Histidyl-tRNA synthetase, class IIa 4.1e-124
    HMMPfam Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain 1.7e-20
    HMMPfam Anticodon-binding 6.4e-08

    See the detailed result >

    AT3G46100.1

    Model type
    Protein coding
    Short Description
    Histidyl-tRNA synthetase 1
    Curator Summary
    histidyl-tRNA synthetase
    Computational Description
    Histidyl-tRNA synthetase 1 (HRS1); FUNCTIONS IN: histidine-tRNA ligase activity; INVOLVED IN: histidyl-tRNA aminoacylation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidyl-tRNA synthetase, class IIa, subgroup (InterPro:IPR015807), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Anticodon-binding (InterPro:IPR004154), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Histidyl-tRNA synthetase, class IIa (InterPro:IPR004516); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT5G03406.1); Has 12183 Blast hits to 12140 proteins in 2982 species: Archae - 258; Bacteria - 7725; Metazoa - 293; Fungi - 147; Plants - 90; Viruses - 0; Other Eukaryotes - 3670 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J033046F10 - Rice Full-length cDNAs - Original: J033046F10

    full reading [+] show sequence

    Nucleotide sequence: J033046F10 - full reading
    GATCCAGAAT CAGATCCACA AGGCAGCAGC TGCAGCAGCA TCGACCATGG 
    CGATGGCGCG ATCCATCCTC CTCCTCCTCC TCCTCGCCGC CGCCGCCTCC
    GCCTCCGCCG ACGCGCCCTT CCTCGTCGCG CACAAGAAGG TTTCGCTCTC
    CCGCCCCAAG CCTGGCGTCG AGCGCCTCGC CGTCTCCCTC GACCTCTACA
    ACCAGGGATC CGCAACTGCC TATGATGTGA GCATTAATGA TGATACTTGG
    CCAAAGGAGG CATTTGAGCT TGTCTCTGGA GAGATGTCAA AGACATTGGA
    AAGGCTTGAC CCTGGTGTCA CTGCTTCGCA TGCATTTGTC TTGGAGACCA
    AAGTACAGGG CATGTTTCAG GTTCACCTGC GGTTATTACC TATCGTGTTC
    CCACAAAGGC TGCGCTTCAG GAGGCCTATT CAACCCCCAT CCTTGCACTT
    GATGTTCTTG CTGAGAGGCC TCCAGAAAAG AAGTTTGAAT GGGCTAAGAG
    GCTTGTGGCG AAGTACGGGT CGCTGGTGTC CGTTGTTGGC TTGGTTGGAG
    TGTTTATCTA CCTGGTTGCA AGCCCGTCAA AATCCAGCGG TGCAAAAGCA
    AGCAAGAAGA GGCGTTGATA TACTTGCCTA CCATATATAA GGCAGTGTTT
    GTTCTTTTTT ATTAAAAAGA GGAAGAGATG GTGGCAGGTT TTTTAGATTG
    ATAGCGCGAG AGCTTTAAGG CTGCCGCATC CTTGAACTGT ATGAATTTTC
    TCTGTTTGTG TTTTTGGAAG TTGAAAACCT AACCCAGAGA ATTGGAGAGT
    AGATTTTGTA ACAGATGAAA TCTCAATGCA TCATTTTGAA GTTGCCTGAT
    ACAGATACCT ATTCATTGCA TTTGGTAACA GATGAAATCC C

    Gene models with high sequence identity

    1. AT5G14030.4 [+] show detail - translocon-associated protein beta (TRAPB) family protein
      E-value: 2e-20; Score: 96.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Translocon-associated beta 1.9e-15
    HMMPfam Translocon-associated beta 1.5e-34
    HMMPanther Translocon-associated beta 1.5e-21

    See the detailed result >

    AT5G14030.4

    Model type
    Protein coding
    Short Description
    translocon-associated protein beta (TRAPB) family protein
    Computational Description
    translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR