K11011

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11011

Determination of introduced cDNA(s)

J033075B20 - Rice Full-length cDNAs - Original: J033075B20

full reading [+] show sequence

GGTCCGCTAG CCCCCTCCTC CCTCCGTTGG TCTCCGCCCA CCCAGAGGAA 
ACCACCCGCC CCCGGTCCCC GGAGGAAAGC TTCGGCCATG GCGGCGGCGG 
CGGCGGCTCG GAGGGGATGC CTGGTCGCGC TTCTGGCGGT GCTCTTCTTG 
GCCTGCGCCG CTGAGGGGGG TGCGGCGGCG GCGTCGGCGG CGCAGCAGCA 
GCAGCAGCTA CGGCGGCGGA GGCATCTGCT GCGGCGGCAG CGGCAGGTGC 
ACAGCCACCT CAGGCGGCTC AACAAGGCGC CCCTCGCCAG CATCGAGAGT 
CCTGATGGAG ACATCATAGA CTGTGTGCAC ATCTCCAACC AGCCTGCCTT 
TGATCACCCT TTCCTCAAGA ACCACACTAT CCAGATGAGG CCTGATTACC 
ACCCAGAAGG CCTGTATGAT GAGTCCAAGG TTGCATCACA GCAGAACACC 
CAGACAATCA CCCAAATGTG GCACAAGAAC GGCGTGTGCC CGGAGAACAC 
CATACCAATC AGGAGGACCA AGAAGGAGGA TGTCCTAAGG GCCAGCTCCA 
TCAGGAGATA TGGCAAGAAG AAGCACAAGA GCACCCCAAA CCCCATGTCT 
GTCGACCCTG ATATGCTCAA TGAGAGTGGC CACCAGCATG CAATAGCATA 
TGTGGAAGGT GATAAGTACT ATGGAGCTAA GGCTACCATC AATGTGTGGC 
AGCCAAGAAT TGAGCAGGCC AATGAGTTCA GCCTGTCCCA GCTCTGGATC 
TTGGGTGGTT CCTTTGGGCA GGACCTTAAC AGCATTGAAG CAGGATGGCA 
GGTTAGCCCA GATCTGTATG GGGACAACAA CACTAGACTC TTCACCTACT 
GGACTAGCGA TGCGTATCAG GCAACAGGAT GCTACAACCT GCTGTGCTCG 
GGGTTCATAC AGATAAACAA TCAGATAGCC ATGGGCGCTA GCATCTCCCC 
ACTCTCCAAC TATGGTGGTT CCCAGTATGA TATCAATATT TTGGTCTGGA 
AGGACCCAAA GGAGGGCAAT TGGTGGTTGC AGTTCGGTAA TGACTATGTG 
TTAGGCTACT GGCCATCCTT CCTCTTCTCC TACTTGGCAG ACAGTGCCTC 
CATGATAGAG TGGGGTGGTG AGGTGGTGAA CTCGGAGCCT GATGGCAGCC 
ACACCTCCAC ACAGATGGGC AGTGGCCACT TCCCTGAGGA AGGATTTGGC 
AAGTCCAGCT ACTTCAAGAA CATACAAGTG GTGGATTCAT CAAACAATCT 
TAGGGCACCA AGTGGTATTG GGTCATTCAC TGAGCAATCC AACTGCTATG 
ATGTGCAGAA TGGCAACAAT GGTGACTGGG GCACATACTT CTACTATGGA 
GGGCCAGGGA AAAACCCAAA CTGTCCATAG TAGAAATGGA AAAATTCTAT 
CCATGCCCCT AACAAACCCT TGACACCTCT GTATTATGCA GTAAATTAGT 
TTACACCTCT TCTCTTTTTC TCCTCTTGGT TTTTGTTTTG GTTTCACCAT 
TTTCCCACCA GGTTATTAAC TTCTAGGTAA GTGTTTGACA TGTGAAATTT 
GTTCTCTTCC TCAGAGATGT TGGTCTGGCT CTTGGGAGGA GTGCGGTCAA 
GTTTCTGAAG AGAAACAGGC CTGTTTGGTT GGTTGGTTTG TGCACTTGTG 
CCTCATGTTT TGTCAAATAT TTTTTGTTTT CTCCCATGCA TGCCTTCAAC 
TTGATTGTTG GAGCCTTGGA GGTACTGCAC TTGTTAAGTT GAATTCAATT 
AATTAGGCTG TTGGTGCATG TGTGTGGCCT TTGGTT

Gene models with high sequence identity

AT3G13510.1 [+] show detail - Protein of Unknown Function (DUF239)
E-value: 8e-177; Score: 617.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF239, plant	1e-78
Coil	coiled-coil	0

See the detailed result >

AT3G13510.1

Model type: Protein coding
Short Description: Protein of Unknown Function (DUF239)
Computational Description: Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G55360.1); Has 759 Blast hits to 705 proteins in 28 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 734; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR