K11013

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11013

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11013

Determination of introduced cDNA(s)

  • J013077C21 - Rice Full-length cDNAs - Original: J013077C21

    full reading [+] show sequence

    Nucleotide sequence: J013077C21 - full reading 
    GGCACAATCG GTCAGTCGCA CAGATAACAC CGTAGTATCA GACAAGACCT 
    CATCTCAGTA TCCAGCCGAG AGGAAATCAA AGGAAGAGAA GGGGAAAAGC 
    AATGGCGGGC AAGGACGACG ACGTGAAGGT GCTCGGCCTG GTGATGAGCC 
    CCTTCGCGAT CCGCATATGC ATCGCGCTCA AGTTGAAGGG CGTGAGCTAC 
    GAGTACATCG AGGAGGACCT CGCCAACAAG AGCGAGCTCC TCCCAGCTCC 
    AACCCGGTGC ACAAGAAGAT CCCCGTCCTC ATCCATGGCG GCAAGCCCGT 
    CTCCGAGTCG CTCGTCATCG TGCAGTACGT CGACGAGGCC TGGGCGCCCT 
    CCCCCACGTC GCCCTCCATC CTCCCCGCCG ACCCCTACGA CCGCGCCGTC 
    GCCCGCTTCT GGGCCGCCTA CGTCGACGAC AAGATGGTCC CTGGTATGGT 
    TGGCGTTTTG AGGGCGGCGA CGGAGGAGGA GAGGGCGGCG AAGGCCGACG 
    AGACGCTGGC GGCGATGGCG CAGCTGGAGA AGGCGTTCGC CGAGGTGGCC 
    GCGAAGAACG GGAAGCCCTT CTTCGGCGGC GACACCGTCG GGTACGTCGA 
    CCTCGCGCTC GGTTGCAACC TGCACTTTCT CGAAGCGATC CGCAGGTTGC 
    ACGGCGTGGC GTTGGTCGAC GCCGGCAAGA CCCCGCTCCT GGCGGCGTGG 
    GCGGAGCGGT TCGTGGAGGT CGAGGCGGCC AAGGGGGTGG TGCCGGACGC 
    GGACGACGCC GTGGAGTTCG CCAGGAAAGT CCAGGCTCGT GTAGCAGCTG 
    CTGCTGCTTC CACCGCTGCC AAGTGAGTGG AAAATCGTTT TCGATTGGAT 
    CATTGGGTTT CTTGTAATAA AGAAAAAATC GTGTTATTAC AGTGCCATTT 
    TCAAGTCATG GTTAGTTTAT TTGTGGGGTT ATTAATGTGT AAAGTCTGGA 
    CATGTATGCG TGTTATGTTC TCTGGTTCAT CGATCATAAG CAGCTATACA 
    GACAT

    Gene models with high sequence identity

    1. AT1G10370.1 [+] show detail - Glutathione S-transferase family protein
      E-value: 1e-46; Score: 45.40

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Glutathione S-transferase, N-terminal 10.248
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 19.75
    superfamily Glutathione S-transferase, C-terminal-like 2e-40
    superfamily Thioredoxin-like fold 3.6e-08
    superfamily Thioredoxin-like fold 3.3e-07
    FPrintScan PRICHEXTENSN 1.4e-09
    FPrintScan PRICHEXTENSN 1.4e-09
    FPrintScan PRICHEXTENSN 1.4e-09
    FPrintScan PRICHEXTENSN 1.4e-09
    HMMPanther GLUTATHIONE S-TRANSFERASE 2e-80
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 2e-80
    HMMPanther GLUTATHIONE S-TRANSFERASE 2.6e-20
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 2.6e-20
    HMMPfam Glutathione S-transferase, C-terminal 1.1e-07
    HMMPfam Glutathione S-transferase, N-terminal 2.3e-06
    Gene3D Thioredoxin fold 8.2e-08
    Gene3D Glutathione S-transferase, C-terminal-like 5.8e-46
    Gene3D Thioredoxin fold 7.6e-07

    See the detailed result >

    AT1G10370.1

    Model type
    Protein coding
    Short Description
    Glutathione S-transferase family protein
    Computational Description
    EARLY-RESPONSIVE TO DEHYDRATION 9 (ERD9); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to water deprivation, response to karrikin, toxin catabolic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 18 (TAIR:AT1G10360.1); Has 6064 Blast hits to 6029 proteins in 1096 species: Archae - 0; Bacteria - 2896; Metazoa - 397; Fungi - 130; Plants - 2065; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR