K11034

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11034

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11034

Determination of introduced cDNA(s)

  • J023086A12 - Rice Full-length cDNAs - Original: J023086A12

    full reading [+] show sequence

    Nucleotide sequence: J023086A12 - full reading 
    GTGCAGGTGG CGCCTCTAAT TCCTCCTCCT CGCGCCCTAG TCCCCTCGCC 
    TTCCCCTCCC GTCTCCTCGC CCGCCGGCCG CCGCCTGCGA CGATCCCCAT 
    CCCGCGAGCG GCAGCGGTAC CGGCGGTCCT CTGCCGCACC CTCGCCGCGG 
    TGAGCTCCCG GTCAGCAGTT TCCACATCTC AGCTAAGGAC TGGAATGGCC 
    AAACCCAATG GCAAAGAGAA AACGGGTGAC ACGGGATTGT CGATGGCTCC 
    TCCAAAGATT TCCAAGGATA GATTTGATGC TGCTATCAGA GCCATGGCTG 
    ATATTGGTAT CCTAAAGGAA ACTGCTGCGC CCGTGTTGAA TAATCTACTA 
    AACTTATTCG ATTACAACTG GGTGCATATA GAAGCTGATA ATTATCTGGC 
    TCTTGCTGAT GCTATATTTT GTGATTCAGA TCCCAAAGAA GGACAGAAAA 
    GGCAAGCTAA TGAGACAAAT CTTGATGCAG ACCAATCTAA CAAGAAGCTT 
    AAGACAAAAA AGCGTTCTCA AAATCCTACA TCCAAGATGC ATGGCAATGA 
    CAATAGAGAG TTTGTTGAAG CTCCACCACA GCAGGGACGA GGCACACTGT 
    CTGCCCGAAC TGTTAATGGG AAGAAAGTCA CCAGGGCCCA CTTGGAGTTG 
    CCTTCTTCAC AATTACTGAT CAAGGAACCA CATACATGCC CTAGCATTGC 
    AAAGAATACA ACAATTGTTG AAAATAATTC TGCTGTATTA TGCCATGGTC 
    AAGACCTTCA AACTTTTGAG GTCCCAGTAG CAACTACTTG TCCGCAAGTT 
    GTAGCCCCCA GTACTCGCAA AGATGCACGT AGGACTTCTG GTGCTCGCCA 
    TGATCAGAAG CATGAAGGTG TATCTGGTGC GCATGAAAGG AACAGGGCTG 
    TTGCGTGTAG CAACCAGGAA ATTGTAAGCA GCAAGGATTC TCCATCCAAC 
    ATTGAGGTAG TTTTGTCAAA TTATGGAGCT GGGAAACTAT CATTCACATA 
    CAACTCTTCC CTGGCAAACC GTTCTGATTT TCATCTGCCT GACATTAAAT 
    TAATTTGCAA GAAAATGGAG GCTAGATGCC TTAGGAAATA CAAGAGCCTA 
    GAACCCAATT TCTCTTTTAA GAATCTTATT AAAGATACTT GCCAGTGTAT 
    TGTTGAATCT AGTGGACCTA GACATGAAGG CATCATACAA ACTGTTCCTG 
    CCCTGGACAT TCTGTCCAAA CCTTCAGTGC CGCAAATATT GCAGTCAAAT 
    CAAGCTAATT CCGCTTTTAT GCCACCTAAT AATGTCATGA GCCTTGGTGG 
    TACTTCTTCC TCTTGCACTG TTGCTGGAGT TAGCCAGAAT TCTAGTAATA 
    TGCCGGTTGT TCCGCATCAA CTACATATTG GTGCCAACAG ACCACCTCAT 
    GATGTCAATG ATATCACAAA AGGTGAAGAA CGTTTAAGGA TTCCAATTAT 
    TAATGAATAT GGCAATGGGA TTCTTCCTCC TCCATTTCAC TACATACCAC 
    ACAATATCAC ACTCCAAGAA GCCTATGTAA ACATCTCCCT TGCTAGAATC 
    GGAGATGACA ATTGCTGTTC TGATTGTTTC AGAGATTGTC TGGCACAATC 
    ACTTCCTTGT GCGTGTGCTG CAGAAACAGG AGGAGAGTTT GCTTATACAA 
    CAGATGGCCT TCTTAAGGGA GCATTTCTAG ATAGCTGTAT CTCAATGATT 
    CGAGAACCAC TTAAACATCC CCATTTCTAC TGCAAGATTT GCCCAAACGA 
    ACGAATGAAG ATAGAAGTAA ATTCTGATTC ATCAAACACA GAAATGAATC 
    CTGGTCCTTG TAAAGGACAC CTTACAAGGA AATTCATCAA GGAGTGCTGG 
    AGAAAATGCG GCTGCACTAG AAATTGTGGA AACCGTGTGG TGCAGCGAGG 
    CATCACACGC CATTTACAGG TGTTCTTAAC CCCTGAAAAA AAAGGATGGG 
    GATTGCGCAG TACTGAGAAA CTTCCTCGAG GTGCTTTTGT TTGTGAGTAT 
    GTTGGTGAAA TATTAACGAA CATTGAGTTG TATGACCGTA CAATTCAAAA 
    GACTGGTAAA GCAAAGCACA CATACCCATT GTTACTTGAT GCCGACTGGG 
    GTACTGAAGG TGTTCTTAAG GATGAGGAAG CCCTTTGTCT AGATGCCACG 
    TTTTATGGTA ACGTCGCAAG ATTTATAAAC CACAGGTGCT TTGATGCTAA 
    TATTATAGGA ATACCTGTTG AGATCGAGAC GCCCGACCAC CATTATTACC 
    ATCTGGCGTT CTTCACAACA AGGATAATAG AGCCTTTTGA GGAACTCACA 
    TGGGACTATG GGATTGATTT TGATGATGTC GACCATCCTG TGAAGGCATT 
    CAAATGTCAT TGCGGAAGTG AGTTTTGCCG AGACAAAACG CGCAGATCTA 
    AATCGAGGGC GCGGGTTTAA CCTATGAATT CTCTACTCTG CTATTCAAGT 
    GATTCAAGGA AGTCAATGCA GAGCCATTGA TGGTATCGTC CAGAAAGATG 
    ATATAGTAAT TTTTCTCTGG AATAGGATAA ACAATCCAGA TTCCAGAGTT 
    ACAGACTGCT GGTTCAGCAC TTAAATATTC CAACAGCTCA TACGAACTGC 
    TGTCCTTTTT TTCCAAGCTT GGTTGCCCGC AAAGCAGTAT GCTTGGTTGC 
    CCGTTCTTTG TTCCTTTTAC CAATACCAAG TGATGTAAAG AATTCTGGAA 
    TGTGAACTCT CTGCCATGAT ATAGCTCTAG CTCAATGCAT TATATTGGGG 
    AACC

    Gene models with high sequence identity

    1. AT5G43990.5 [+] show detail - SET-domain containing protein lysine methyltransferase family protein
      E-value: 1e-125; Score: 448.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SET domain 4.2e-75
    ProfileScan SET domain 28.247
    ProfileScan Pre-SET domain 8.558
    HMMSmart Pre-SET zinc-binding sub-group 6.9e-07
    HMMSmart SET domain 4.3e-34
    HMMPanther SET DOMAIN PROTEIN 5.7e-134
    HMMPanther SET DOMAIN PROTEINS 5.7e-134
    HMMPfam WIYLD domain 3.7e-25
    HMMPfam SET domain 4.4e-20
    HMMPfam Pre-SET domain 3.9e-19

    See the detailed result >

    AT5G43990.5

    Model type
    Protein coding
    Short Description
    SET-domain containing protein lysine methyltransferase family protein
    Curator Summary
    Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression.
    Computational Description
    SUVR2; FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: homolog of SU(var)3-9 1 (TAIR:AT1G04050.1).
    Link
    InterPro Scan - TAIR