K11038

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11038

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11038

Determination of introduced cDNA(s)

  • J013022H04 - Rice Full-length cDNAs - Original: J013022H04

    full reading [+] show sequence

    Nucleotide sequence: J013022H04 - full reading 
    GATTCTTCCT TTCTCTGTGT TTGTTTGTTT CCAGTTGCCA CTAACCAGCC 
    AGAGCCCCGG GGGGGAGAAG AGCGAGAGAG GAGGAGAAAT CTTGCAGCAA 
    TCCCTCGCTT AGATTCGCCA TTACCGCCGC TTTTGTTCCC ACCAAGATTA 
    CCACCCCCTC CTCCTCCTGT GCTCGAGCGC TCGCATCGCA TTTCAGGCTG 
    CTTCTTGATT CTGCGAGGAG GTTGAAATCT CTCGTGATTG CAACAGCTGC 
    CATCCGTTCG TTCCGGTGGA GTGCACCCCT TCATCACCAA GGAGGAGAAA 
    AAGCTGTAAT CTTCGGCCGT TTCTGCCTTT CTGCAGCAAA CGGTTGAAGA 
    AAAGCCGCGT CTTTTGGGCG GATTTCGCGG AGGCCGCTTG AGGTTTTTAG 
    GCGTGGTTCG TGTGAGCTTC TCTTTGGAAT TTGTGGGGGA AAGAGTGAGG 
    GAGGGAGGGA GCTCAGTGGG AGAGATGGAG GGGAATTTGC CGCCGAGAGG 
    AGCCCTTGTC CATGGCCATG GCGGCGGCGT CGGCGCCTTC GATCTGGAGG 
    CGACGATGCA GCCGCCGCCG CCGTTCCACT TCGCCCAGGA TCCGCACCTC 
    CACCACCACC AGGGCATGGT CCCCGTCCGC GGGAACCCGA TGCTGGATTT 
    GGGCAATGTG GTCAAGACCT CGCCGAGCGA CGAGGAGGAC GTGGATGACG 
    GCCACCACCA TGGTGGCGGC GGCGGCAGCG GTAAGGAGGC CTCCCAGTGG 
    CACCGGGTGA AGTGGATCAG TGGCATGGTC AAGCTGCTGG TGTCCGCCGT 
    GGCCTACATC GACGAGGACG TCGACATGGA CTACGGCACG GGCAGCGCCG 
    CGAGGAGGAA GCACGCCATG CTGAAGAGGA AGGGGAAGTG GAGGCTCGTC 
    TCCGCGGCGA TGACCGAGAG GGGCTTCCCG GTGTCGCCGC AGCAGTGCGA 
    GGACAAGTTC AACGATCTCA ACAAGAGGTA CAAGAGGATG ACCGAGATCC 
    TTGGCCGGGG AACGGCGTGC CAGGTCGTCG AGCACCCCGA GCTTCTTGAG 
    GGGATGCGGC TCTCGGGAAA GCTCAAAGAG GAGGCTAGGA AGCACCTGAA 
    CTCAAAGCAT CTGCACTATG AGGAGATGTG CTCGTACCAT AACAGGAACA 
    AAATGTGTCT GTTTGATGAT CCCGCCCTTC AGAAGTCATT GCGTTTGGCG 
    CTTAGGAGTG GAGAGGAGCG TGCAAAGAAG AACCCGTTTG GGTATGATGA 
    TGAGGATTTT TCTGACGATG ACGACGAAGA TGAAGAATTC GATGATCTGG 
    AGGTCAGCGC TGAAGATCAT CACCATGGAA TTCATGGTGC CAAGAGGCTG 
    AAGCATGATC AGGAGGAGAC GCATTTTGGG TCTAATCTGT CAGAAGTTGC 
    TGTTATTGAC ATGAACAAAA TGCTCTCTGA GGGATCTGGT GGTCCAACTG 
    CTGAAAAGAG TCCCTCTACC CCTGGTATGC GTGATATTCG ACTTGAAAAA 
    CGCCGCCTGA AGATCAAAGC TCAGATGCTG AAAATTGAGC AGAAGCATTT 
    CAAGTGGCTG AGGTTCAGCA AGGAGAAGGA CAGGGAATTG GAGAAGATGA 
    GACTGGAGAA TGAAAAGATG AAACTGGAGA ATGAGCGGTT GGAATTGGAG 
    CTGAAGCTTA AAGAAATAGA GATGGGTATC AAACCAAAGA AGATTTTTAG 
    TGATTGAAGC CTTGGAATGA TAGAACTAGA AATGGTTAGA GTTGCTGGTG 
    ATCCTTTTGT CTTTTGCAGG AGCTTGCAGA TTTAGGGTCT TATATATACA 
    TTGATCTGTG CCCCTGTTTG AATTTTACCT TAGCTAACTG CAATCGGTCA 
    AGTGAATGGC TATTCCAGTT GTTAAGTGTT TAAACTTGGT ACTAGTTGGC 
    CTTTCAAATG ATAAATGTTT AAGCCGTCCT TGTACATGCC TGCTGTTAAC 
    TTTCTGCAGT TGTTTGTGTG TTGCTATTGA CCTCTGAGTC TTTTTTTT

    Gene models with high sequence identity

    1. AT1G21200.1 [+] show detail - sequence-specific DNA binding transcription factors
      E-value: 2e-57; Score: 220.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT1G21200.1

    Model type
    Protein coding
    Short Description
    sequence-specific DNA binding transcription factors
    Computational Description
    sequence-specific DNA binding transcription factors; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76870.1); Has 317 Blast hits to 297 proteins in 56 species: Archae - 2; Bacteria - 28; Metazoa - 67; Fungi - 2; Plants - 135; Viruses - 9; Other Eukaryotes - 74 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR