K11050

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11050

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11050

Determination of introduced cDNA(s)

  • J023031F21 - Rice Full-length cDNAs - Original: J023031F21

    full reading [+] show sequence

    Nucleotide sequence: J023031F21 - full reading 
    GATTTCTCTC TGCCTCTCCA CCTCCACGTC CATCTCTCTC TCTCTCTCCT 
    CTCTCCTCTC TCCTCTCTCC TGTCGCCTTC CCACGCGCGC CGCTCGATCC 
    GTGTAGCTGT CAGCGATGGC TGAGGAGGCG AAGCAAGAGA CCCCCGCCGC 
    CGCCGAGGTG GTGGTGGTGG AGAAGGCCGA CGAGGTGGTG GCGGTGGAGA 
    AGGCCGTGGA GGTGGAGGCG GAGGAGAAGA AGTTGGCGGA GCAGGAGGAG 
    GAGGAGGAGA AGAAGGCGGA GGAGGCGGAG GAGGCCGCTG GGGGCGATGA 
    GGCGGCGGTG ATCGAGGGGA CGGGGTCGTT CAAGGAGGAG AGCAACCTCG 
    TCTCCGAGCT CCCCGACCCG GAGCGCACGG CGCTCGCCCA GCTCAAGGAG 
    CTCGTCGCCG CCGCGCTTGC CGCCGGCGAG TTTGACCTTC CCCCGCCGCC 
    GCCGCCTCCA CCGGCCAAGG CGGAGGAGCC GGCCAAGGAG GAGGAACCCA 
    AGGCCGCCGA GGCCCCCGCC GCCGAGGAGC CCAAGGCCGA GGCCGAGGCT 
    GAGGCTGAGG CCGCCGCCAC GGAGGAGCCC AAGACCGAGG AGCCCAAGAC 
    CGAGGAGCCC GCCAAGGAGG AGGAGCCCAA GGCGGCGGCG GCGGCTGCGG 
    CCGAGGAGCC CAAGGCGGAG GCGGCGGCGG GGGAGGCCAA GCCGGCCGAG 
    CCGGAAACGG AGGAGAAGAC CGTCGTGGTC ACCGAGGATG AAGGCACCAG 
    CAAGACGGTG GAGGCCATCG AGGAGACCGT CGTCGTCGCC GCCCCGGCCG 
    CGGCCGCGGA AGCCGAGGCT GCGGCGCCGA AGGAGGAGCT GATATGGGGC 
    GTGCCGCTGA CCGGCGACGA CGAGCGCACG GACACCGTGC TGCTCAAGTT 
    CCTCCGCGCC AGGGAGTTCA AGGTGAAGGA GGCCATGGCG ATGCTCAAGG 
    CGGCGGTGCT GTGGCGCAAG CGCTTCGGCA TCGACGCCGT CCTGGCCGCC 
    GACCTCGGCC TGCCGGAGCT CGAGAACGTG GTGTTCTACC GCGGCGCCGA 
    CCGCGAGGGC CACCCCGTCT GCTACAACGT CTACGGCGAG TTCCAGGACA 
    AGGACCTCTA CGAGAAGGCC TTCGGCGACG AGGAGAAGCG GGAGCGATTC 
    CTCAAGTGGC GCATCCAGCT CCTCGAGCGC GGCATCCTCG ACCAGCTCGA 
    CTTCTCCCCC AGCGGCATCT GCTCCATGGT GCAGGTCACC GACCTCAAGA 
    ACTCGCCGCC CATGCTCGGC AAGCACCGCA CCGTCACCCG CCAGGCGCTC 
    GCCCTGCTCC AGGACAACTA CCCCGAGTTC ATCGCCAAGA AGATTTTCAT 
    CAACGTGCCA TGGTGGTACA TTGCGGCTAA CAAAATGGTG AGTCCGTTCC 
    TCACACAACG CACCAAGAGC AAGATCATCT TTTGCACCGC AGCCAAGTCT 
    GCAGAGACCC TTTTCAGATA CATTGCTCCT GAGCAAGTCC CTGTCCAATT 
    CGGAGGCCTC TACAAAGAGG ATGACACCGA GTTCTCCACC TCAGATGCTG 
    TCACAGAGCT TCCGATCAAA CCTTCATCCA AAGAAACTGT TGAGATTCCT 
    GCTACTGAGA ACTCCACGGT TGTGTGGGAG CTTCGGGTGC TTGGGTGGGA 
    GGTGAGCTAC GGTGCAGAGT TCACCCCTGA TGCAGAGGGT GGCTACACTG 
    TCATTGTGCA GAAGACAAGG AAGGTGCCCG CCAATGAAGA GCCGATCATG 
    AAGGGCAGCT TCAAGGTTGG CGAGCCTGGC AAGATCGTCC TCACAGTCGA 
    CAACGCAGCA TCCAAGAAGA AGAAGCAGCT TCTTTACCGA TTCAAGGTCA 
    AGAGCTCCTC TGAATCTGCC TAAGGTTCGA GATATTTGGC TCTATAGATA 
    TGATCACCAA CCAAGGTCCA CAGGTCCATA CCACCACCAT TTGAACATGT 
    TGCATCATAG AAGAGAACAA TAAGATTTTT AGGTGGTCTT TTGTGGTTTT 
    GTTCTTTAAT TTGTTGGCTT GCTGTTCTTC TGGGGGGTTC ACATTTGTAT 
    GTGTTTACTT AAAACCAAAG TGAGCTTGTT CTATGAGAGA TAGGTGGGAG 
    AAGGTGGGGG GAGGAGTATG AGATGGTGAT GTTTCTTGTC TTCTTGAGGT 
    CAGGACAGGA GGGAGGGAAC TGTGGAAGGA AGAACTGAAG ACTAGCTGTT 
    GCTGATCTGT ATATCTGTCT GTACATTGCA TCCATGGATT CTCTTTCAGC 
    AACATGTTAA TTTTTAGAAG AGAAGC

    Gene models with high sequence identity

    1. AT4G09160.1 [+] show detail - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
      E-value: 1e-110; Score: 398.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan A.T hook-like 5e-05
    FPrintScan A.T hook-like 5e-05
    FPrintScan A.T hook-like 5e-05
    FPrintScan PRICHEXTENSN 2.4e-12
    FPrintScan PRICHEXTENSN 2.4e-12
    FPrintScan PRICHEXTENSN 2.4e-12
    Gene3D no description 1.1e-05
    Gene3D Cellular retinaldehyde-binding/triple function, C-terminal 1.7e-36
    HMMPanther SEC14 CYTOSOLIC FACTOR-RELATED 2e-108
    HMMPanther SEC14 RELATED PROTEIN 2e-108
    HMMPfam Cellular retinaldehyde-binding/triple function, C-terminal 3.5e-22
    HMMPfam Cellular retinaldehyde-binding/triple function, N-terminal 2.9e-09
    Coil coiled-coil 0
    superfamily Cellular retinaldehyde-binding/triple function, C-terminal 1.1e-34
    superfamily Phosphatidylinositol transfer protein-like, N-terminal 4.4e-11
    superfamily Supernatant protein factor (SPF), C-terminal 1.2e-07
    ProfileScan Cellular retinaldehyde-binding/triple function, C-terminal 17.567
    ProfileScan GOLD 11.168
    HMMSmart Cellular retinaldehyde-binding/triple function, C-terminal 2.8e-36

    See the detailed result >

    AT4G09160.1

    Model type
    Protein coding
    Short Description
    SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
    Computational Description
    SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G72160.1); Has 12185 Blast hits to 8606 proteins in 820 species: Archae - 53; Bacteria - 1604; Metazoa - 4851; Fungi - 2300; Plants - 1007; Viruses - 130; Other Eukaryotes - 2240 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR