K11106

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Shape::zigzag) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11106

Determination of introduced cDNA(s)

J013064M13 - Rice Full-length cDNAs - Original: J013064M13

full reading [+] show sequence

GGCTTGAGCT GACCTGACCC CGAGCCGAGC CGTACACCAC CGGAGGAGGA 
GGAGGAAGCC GGCGAGGTGA CGCTGCGAGA TCGGGAGGTA GGGTTCGGGG 
GGAGGTTTTG GGTTTGGTGG ATGGTCACGG CGGCGGCGGA GTTCGTCGAT 
GGGCAGGTCG TTCAGGGACT CGCTGAAGGT GCTCGAGGCC GACATCCAGC 
ACGCCAACTC GCTTGCTGCT GAATTTAGAA GGGAATATGA TGGCGCCTGT 
CTTCAGATGA GAATGTCATA CTGTCCAGCT GCACACTTCT TCCTTTTTCT 
TGTGCAGTGG ACAGATTGCA ACCTTGCTGG TGCACTTGGG CTGTTGAGGA 
TTCTCATTTA TAAGGTTTAT GCTGATGGGA CTACCACCAT GTCTGCTCAT 
GAAAGGAAAG CAAGCATTAG GGAATTCTAT GCTGTCATAT TTCCTTCTTT 
GATGCAACTA CATGAAGGGA TCAATGAAGT GGAAGACAAG AAACAAAAGG 
CAATCTGTAT AGAAAGATAT AGAAGACGAG ATGAAGATCA GAAAATGGTG 
ATTTCAGAGA TTGATGATAA CATCGAGGAG GAATGTGGCA TATGTATGGA 
GATAAATGGC AAAGTAGTTC TTCCAACTTG TAGCCATGCT ATGTGCATTA 
AATGCTACCG TGACTGGAGA TCAAGATCCC AGTCTTGTCC ATTCTGCCGC 
GATAGTCTCA AGAGAGTGAA CTCGGCCGAC CTATGGATAT ATACAGATAA 
CAGGGACATA GTGGACATAG CGACGGTCCG AAAGGAAAAT CTTAGGCGGC 
TCTTCATGTA CATAGACAAG TTGCCCACGG TCATCCCTGA AACTGTTTTT 
GACGTTTACG ATTCCCACGT AAAATGACCT TGCACTCATG CACAAATTCT 
TTACTGGTGT GTTACTACTA GTGCTGTAGA AATTGTGGAG CCCTTGGTGT 
TCATGCTGCC CCGCTTGTAG AAGCTGTAAG CAGCTAAGCT CGCCGAGGAG 
GCTCGCTATA CAAAGGTATA TATGTAAATT GTCTTGGCTG TATGGTGTGT 
ACCTTTGTGA GGAGTTAGGA GAATCTGATG CCAGTCAGTC TGTAAGTAAG 
GAAGAACCAG CAACCATTGA CTTTGTTTCT TTTAATTGTA AGCATTTCAC 
TTTCACCCAT GAAACAGTGA AGAATGCCAT CCTGACAGCT TGATTGCTCC 
TGTACGATGC TGTTGCTCGT TGTGAATGGG GAGTTTTCAG TTCCTGGAAG 
AAGAATCAAG AAATGGAGGG CCACTGATTT GATCGTGCAC AGAAGTGAGA 
CAAGAGTCTG AACTGGTACA GTATCCCCAA TAATAATTTC CTGATCTGCT 
GCACGTGCAT CCTCTATCTC TGTAATGTCT TGCACGTTCT GAAAATGGAG 
AAACTCCACT GCATTTGGAG CTCTGCAGTT GGATACTTCT GAGCCTGTTT 
GGCACAACTT TACCTTTTTT GTAACTGGAG TCCAGCCAAA CAGTGTAAAT 
AGTTTCAGCC CCATCTGGAG TTAGGTGAAG CATTCTCACA AAATGAACTA 
GAGAGGTGGA GCTGGGTTTA TGCTGCTACA CAACTCAACT CTAGATTTAA 
CACCTGGAGC TTAATTTAAA AGTTGGAGCA TGTCCTCTGT CAGGATGAAA 
ACTCATCAAG TTTATCTTCG TTCTTGTCCA AATATTTCTG TCATTTGTAC 
ATCTCTGAAT TTGTTTTT

Gene models with high sequence identity

AT3G47160.1 [+] show detail - RING/U-box superfamily protein
E-value: 8e-83; Score: 305.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
Gene3D	no description	7.6e-11
HMMPanther	FAMILY NOT NAMED	1e-05
ProfileScan	Zinc finger, RING-type	11.811
PatternScan	Zinc finger, RING-type, conserved site	0
HMMPfam	Zinc finger, C3HC4 RING-type	5.7e-05
superfamily	RING/U-box	1.4e-13
HMMSmart	Zinc finger, RING-type	3.2e-06

See the detailed result >

AT3G47160.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G58787.1); Has 1132 Blast hits to 1132 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 465; Fungi - 45; Plants - 326; Viruses - 118; Other Eukaryotes - 178 (source: NCBI BLink).
Link: InterPro Scan - TAIR