K11106

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11106

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11106

Determination of introduced cDNA(s)

  • J013064M13 - Rice Full-length cDNAs - Original: J013064M13

    full reading [+] show sequence

    Nucleotide sequence: J013064M13 - full reading 
    GGCTTGAGCT GACCTGACCC CGAGCCGAGC CGTACACCAC CGGAGGAGGA 
    GGAGGAAGCC GGCGAGGTGA CGCTGCGAGA TCGGGAGGTA GGGTTCGGGG 
    GGAGGTTTTG GGTTTGGTGG ATGGTCACGG CGGCGGCGGA GTTCGTCGAT 
    GGGCAGGTCG TTCAGGGACT CGCTGAAGGT GCTCGAGGCC GACATCCAGC 
    ACGCCAACTC GCTTGCTGCT GAATTTAGAA GGGAATATGA TGGCGCCTGT 
    CTTCAGATGA GAATGTCATA CTGTCCAGCT GCACACTTCT TCCTTTTTCT 
    TGTGCAGTGG ACAGATTGCA ACCTTGCTGG TGCACTTGGG CTGTTGAGGA 
    TTCTCATTTA TAAGGTTTAT GCTGATGGGA CTACCACCAT GTCTGCTCAT 
    GAAAGGAAAG CAAGCATTAG GGAATTCTAT GCTGTCATAT TTCCTTCTTT 
    GATGCAACTA CATGAAGGGA TCAATGAAGT GGAAGACAAG AAACAAAAGG 
    CAATCTGTAT AGAAAGATAT AGAAGACGAG ATGAAGATCA GAAAATGGTG 
    ATTTCAGAGA TTGATGATAA CATCGAGGAG GAATGTGGCA TATGTATGGA 
    GATAAATGGC AAAGTAGTTC TTCCAACTTG TAGCCATGCT ATGTGCATTA 
    AATGCTACCG TGACTGGAGA TCAAGATCCC AGTCTTGTCC ATTCTGCCGC 
    GATAGTCTCA AGAGAGTGAA CTCGGCCGAC CTATGGATAT ATACAGATAA 
    CAGGGACATA GTGGACATAG CGACGGTCCG AAAGGAAAAT CTTAGGCGGC 
    TCTTCATGTA CATAGACAAG TTGCCCACGG TCATCCCTGA AACTGTTTTT 
    GACGTTTACG ATTCCCACGT AAAATGACCT TGCACTCATG CACAAATTCT 
    TTACTGGTGT GTTACTACTA GTGCTGTAGA AATTGTGGAG CCCTTGGTGT 
    TCATGCTGCC CCGCTTGTAG AAGCTGTAAG CAGCTAAGCT CGCCGAGGAG 
    GCTCGCTATA CAAAGGTATA TATGTAAATT GTCTTGGCTG TATGGTGTGT 
    ACCTTTGTGA GGAGTTAGGA GAATCTGATG CCAGTCAGTC TGTAAGTAAG 
    GAAGAACCAG CAACCATTGA CTTTGTTTCT TTTAATTGTA AGCATTTCAC 
    TTTCACCCAT GAAACAGTGA AGAATGCCAT CCTGACAGCT TGATTGCTCC 
    TGTACGATGC TGTTGCTCGT TGTGAATGGG GAGTTTTCAG TTCCTGGAAG 
    AAGAATCAAG AAATGGAGGG CCACTGATTT GATCGTGCAC AGAAGTGAGA 
    CAAGAGTCTG AACTGGTACA GTATCCCCAA TAATAATTTC CTGATCTGCT 
    GCACGTGCAT CCTCTATCTC TGTAATGTCT TGCACGTTCT GAAAATGGAG 
    AAACTCCACT GCATTTGGAG CTCTGCAGTT GGATACTTCT GAGCCTGTTT 
    GGCACAACTT TACCTTTTTT GTAACTGGAG TCCAGCCAAA CAGTGTAAAT 
    AGTTTCAGCC CCATCTGGAG TTAGGTGAAG CATTCTCACA AAATGAACTA 
    GAGAGGTGGA GCTGGGTTTA TGCTGCTACA CAACTCAACT CTAGATTTAA 
    CACCTGGAGC TTAATTTAAA AGTTGGAGCA TGTCCTCTGT CAGGATGAAA 
    ACTCATCAAG TTTATCTTCG TTCTTGTCCA AATATTTCTG TCATTTGTAC 
    ATCTCTGAAT TTGTTTTT

    Gene models with high sequence identity

    1. AT3G47160.1 [+] show detail - RING/U-box superfamily protein
      E-value: 8e-83; Score: 305.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Gene3D no description 0.000000000076
    HMMPanther FAMILY NOT NAMED 0.00001
    ProfileScan Zinc finger, RING-type 11.811
    PatternScan Zinc finger, RING-type, conserved site 0
    HMMPfam Zinc finger, C3HC4 RING-type 0.000057
    superfamily RING/U-box 0.00000000000014
    HMMSmart Zinc finger, RING-type 0.0000032

    See the detailed result >

    AT3G47160.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G58787.1); Has 1132 Blast hits to 1132 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 465; Fungi - 45; Plants - 326; Viruses - 118; Other Eukaryotes - 178 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR