K11113

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11113

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11113

Determination of introduced cDNA(s)

  • J023082D24 - Rice Full-length cDNAs - Original: J023082D24

    full reading [+] show sequence

    Nucleotide sequence: J023082D24 - full reading
    GTTACAGAAA ACATCTTGGC TAGCAATTTC CATGGAGAAA ATCCAAGTGA 
    CCACACCCAT GGCAGACTCC TCGTTCAATC CGGAGTTTCT GCAAGCACAT
    GCAGAGCTTT GGAATCTCAC CTTTAGCTAC CTGAAAGCCA TGGCGCTTGA
    GTGTGCTATC AAGCTTGGGA TCCCCAACGC CATTCATCGT TGTGGTGGTT
    CTGCCTCACT ATCGGAACTG GTCATCTCCA TTCCAGTGCC TGAGACTAGA
    AAGCCTCATC TGCCTCGCCT CATGAGGTTT CTTGCCGCGG TAGGTGTTTT
    TTCCCTCGAT AACCCAACTA TTGATGAAGA GGTGACCGAG AAAGGCATGG
    GCATATACCG CCTCACACCA TTGTCTCGCC TCCTTGTGGA TGGTAGCATC
    GGTGGGCATG GAAGCCTCTC TCCGTTTGTG CTCTCCCAAA CCACCAAGTA
    TCATGTGTCT GCAGCTATGA ATCTATCTGA CTGGTTCATG ACTGAGGACA
    AAGAGGTTGC CATAGAGATG CCATTTAGGG CTGCTCATGG CACAGACTTG
    TGGGGTGTTA TGAGTCGTGA TGCTAACATG AATGAGGTGT TCAATGCTGG
    CATGGGTTCC GATAGTCGTC TTGCAATCAA TTTTATTATT AGCAAATGTG
    GTGAGGTGTT TGAGGGGATT AGCTCATTGG TTGATGTTGG TGGTGGTACT
    GGCACAACAG CAAGAGACAT TGCTAAGGCT TTCCCACATA TCAAGTGCTC
    GGTACTGGAT CTTCCAAATG TAATCGATAC TATCACGGTG GATGGCATAA
    TTGAGTATAT TGCAGGTGAC ATGATGGAAC AAATCCCACC AACTGATGCC
    GTGCTGCTCA AGTATATTCT ACATGACTGG TACGATGAGG ATTGTGTAAA
    GATCCTAAAA CAATGTAGAA ATGCTATTCA TGCTCAGAAG CCAGGAGGAA
    AAGTTATTAT CATAGACATA GTGGTTGGAT CCCCTTCTAA AGACATGTTT
    GAAGCTCAAG TTTCATTTGA TCTATTGATG ATGGTGATAA CATCAGGCAA
    GGAACGTGAT CAGCATGAAT GGCATAAGAT ATTCATGGAT GCGGGATTTA
    GTCATTACAA GACAAGGCCT GTTTTGGGGT TTTTGGCCAT CACTGAGCTC
    TATCCGTAGA AGGAATCCCA ACATGTGTTT GCTTTTCAAT ATGCATGTTT
    TAGCTTGGGC CCAATAAAGT GAATATGCAT GCCTCCATTG GTTTGCATAT
    TTACTATGAT CGGTTGAAAG TCCAAGATGG AAATTAATAA AGACAATACT
    TTAGC

    Gene models with high sequence identity

    1. AT4G35160.1 [+] show detail - O-methyltransferase family protein
      E-value: 4e-48; Score: 189.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1e-78
    superfamily "Winged helix" DNA-binding domain 3.2e-28
    HMMPIR O-methyltransferase, COMT, eukaryota 9.1e-160
    HMMPanther O-METHYLTRANSFERASE 4e-44
    HMMPfam O-methyltransferase, family 2 8.4e-72
    HMMPfam Plant methyltransferase dimerisation 1.5e-11
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 1.8e-26
    Gene3D no description 2.8e-72

    See the detailed result >

    AT4G35160.1

    Model type
    Protein coding
    Short Description
    O-methyltransferase family protein
    Computational Description
    O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT4G35150.1); Has 3345 Blast hits to 3334 proteins in 568 species: Archae - 3; Bacteria - 935; Metazoa - 112; Fungi - 688; Plants - 1514; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR