K11113

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11113

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11113

Determination of introduced cDNA(s)

  • J023082D24 - Rice Full-length cDNAs - Original: J023082D24

    full reading [+] show sequence

    Nucleotide sequence: J023082D24 - full reading 
    GTTACAGAAA ACATCTTGGC TAGCAATTTC CATGGAGAAA ATCCAAGTGA 
    CCACACCCAT GGCAGACTCC TCGTTCAATC CGGAGTTTCT GCAAGCACAT 
    GCAGAGCTTT GGAATCTCAC CTTTAGCTAC CTGAAAGCCA TGGCGCTTGA 
    GTGTGCTATC AAGCTTGGGA TCCCCAACGC CATTCATCGT TGTGGTGGTT 
    CTGCCTCACT ATCGGAACTG GTCATCTCCA TTCCAGTGCC TGAGACTAGA 
    AAGCCTCATC TGCCTCGCCT CATGAGGTTT CTTGCCGCGG TAGGTGTTTT 
    TTCCCTCGAT AACCCAACTA TTGATGAAGA GGTGACCGAG AAAGGCATGG 
    GCATATACCG CCTCACACCA TTGTCTCGCC TCCTTGTGGA TGGTAGCATC 
    GGTGGGCATG GAAGCCTCTC TCCGTTTGTG CTCTCCCAAA CCACCAAGTA 
    TCATGTGTCT GCAGCTATGA ATCTATCTGA CTGGTTCATG ACTGAGGACA 
    AAGAGGTTGC CATAGAGATG CCATTTAGGG CTGCTCATGG CACAGACTTG 
    TGGGGTGTTA TGAGTCGTGA TGCTAACATG AATGAGGTGT TCAATGCTGG 
    CATGGGTTCC GATAGTCGTC TTGCAATCAA TTTTATTATT AGCAAATGTG 
    GTGAGGTGTT TGAGGGGATT AGCTCATTGG TTGATGTTGG TGGTGGTACT 
    GGCACAACAG CAAGAGACAT TGCTAAGGCT TTCCCACATA TCAAGTGCTC 
    GGTACTGGAT CTTCCAAATG TAATCGATAC TATCACGGTG GATGGCATAA 
    TTGAGTATAT TGCAGGTGAC ATGATGGAAC AAATCCCACC AACTGATGCC 
    GTGCTGCTCA AGTATATTCT ACATGACTGG TACGATGAGG ATTGTGTAAA 
    GATCCTAAAA CAATGTAGAA ATGCTATTCA TGCTCAGAAG CCAGGAGGAA 
    AAGTTATTAT CATAGACATA GTGGTTGGAT CCCCTTCTAA AGACATGTTT 
    GAAGCTCAAG TTTCATTTGA TCTATTGATG ATGGTGATAA CATCAGGCAA 
    GGAACGTGAT CAGCATGAAT GGCATAAGAT ATTCATGGAT GCGGGATTTA 
    GTCATTACAA GACAAGGCCT GTTTTGGGGT TTTTGGCCAT CACTGAGCTC 
    TATCCGTAGA AGGAATCCCA ACATGTGTTT GCTTTTCAAT ATGCATGTTT 
    TAGCTTGGGC CCAATAAAGT GAATATGCAT GCCTCCATTG GTTTGCATAT 
    TTACTATGAT CGGTTGAAAG TCCAAGATGG AAATTAATAA AGACAATACT 
    TTAGC

    Gene models with high sequence identity

    1. AT4G35160.1 [+] show detail - O-methyltransferase family protein
      E-value: 4e-48; Score: 189.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1e-78
    superfamily "Winged helix" DNA-binding domain 3.2e-28
    HMMPIR O-methyltransferase, COMT, eukaryota 9.1e-160
    HMMPanther O-METHYLTRANSFERASE 4e-44
    HMMPfam O-methyltransferase, family 2 8.4e-72
    HMMPfam Plant methyltransferase dimerisation 1.5e-11
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 1.8e-26
    Gene3D no description 2.8e-72

    See the detailed result >

    AT4G35160.1

    Model type
    Protein coding
    Short Description
    O-methyltransferase family protein
    Computational Description
    O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT4G35150.1); Has 3345 Blast hits to 3334 proteins in 568 species: Archae - 3; Bacteria - 935; Metazoa - 112; Fungi - 688; Plants - 1514; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR