K11116

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11116

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11116

Determination of introduced cDNA(s)

  • J013036O11 - Rice Full-length cDNAs - Original: J013036O11

    full reading [+] show sequence

    Nucleotide sequence: J013036O11 - full reading 
    GGTTTCCGTG CCTTTTCCCT CTTCCTCACC TGCCTGACCT GGCCTGGCCT 
    GGCCCCCAAT CAAAAACGAG CGACCTCAAC CGACGGAATC CCCAACCCCA 
    ACCCCCAAAA CCAATCCGCC GCCGCGCTGC CTCGCCTCGC TCGTCGCTCC 
    CACCACCACC ACAAACCCGC GCCTCCTCCG CCGCCGCACG CCCGCCCGCC 
    GACGAATCAG AGTTTGGATT TAATATTACA GGCGCAGCCA TGTTCAACAG 
    GCTCTTTGGT AAGCCCAAGG AGCAGGCCAA TGCTAGTGCG TTGGCCACGC 
    TTGATAAGTT AAATGAGACC CTTGACATGC TGGAGAAGAA GGAGAAAGTC 
    TTAGAGAAAA AGGCAGCCGC AGAACTGGAG AGGGCTAAGG AGTTCTCAAA 
    AGCAAAGAAT AAAAGAGCGG CTATCCAATC CTTGAAGAGA AAAAAGCTTT 
    ATGAACAACA AATTGAGCAG CTAGGGAACT TCCAGTTGAG AATTCATGAT 
    CAGATGATCA TGTTAGAAGC TGCAAAAGCT ACGACAGAAA CCGTTGATGC 
    TTTGAGGACT GGAGCTGCAG CTATGAAAGC AATGCAAAAG GCGACAAATA 
    TTGATGACGT TGATAAGACT ATGGATGAAA TTAATGAACA GACTGAAAAC 
    ATGAAACAAA TACAAGATGC TTTGTCAGCC CCTCTTGGAG CATCTGCTGA 
    TTTTGATGAG GACGAACTAG AGGCAGAACT GGAAGAACTG GAGGGAGCAG 
    AATTGGAATC TCAGCTTCTC GAGCCTGTTG CAGCTCCACC TGTGCATCCA 
    GTGCAGGTCC CAGGCACCAG GATACCAACT CGCCCTGCTC CACAGAAAGC 
    ATCAGCTGAG GAGGATGAGC TTGCAGCCTT GCAAGCTGAA ATGGCATTGT 
    GATCAGGTTC ACAATGAAGA GACGAAATGT ACAAATGATT GGCTGTGCTC 
    TACGGAATTT CAACGAGTCT AGCTACAATA TAATTTCCCA TGTGTGTACA 
    ATCTTTGGGG ATAGTCAGCA ATCAAAGAGA GATGCTGCTT CAGTCCAGTA 
    CTCCAGTGTT CTGTTTTAGT GGCTTGGGGG GTGTCGTCTG TTTTCCTTGC 
    ACATAATTTA AGTTAATCTG GCACAGTAAG CTCCAAGCTA ATCCATAGTC 
    ATGCAATGTG CATTGCTGTC GCACAATATT TTTCATTGAC CATGAAGCCG 
    TGTAAAACAA GTTGAAGCGA TTG

    Gene models with high sequence identity

    1. AT2G19830.1 [+] show detail - SNF7 family protein
      E-value: 1e-54; Score: 210.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SNF7 - RELATED 1e-24
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Snf7 6.8e-44

    See the detailed result >

    AT2G19830.1

    Model type
    Protein coding
    Short Description
    SNF7 family protein
    Computational Description
    SNF7.2; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT III complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT4G29160.3); Has 1789 Blast hits to 1789 proteins in 248 species: Archae - 16; Bacteria - 15; Metazoa - 681; Fungi - 406; Plants - 433; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR