K11116

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11116

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11116

Determination of introduced cDNA(s)

  • J013036O11 - Rice Full-length cDNAs - Original: J013036O11

    full reading [+] show sequence

    Nucleotide sequence: J013036O11 - full reading
    GGTTTCCGTG CCTTTTCCCT CTTCCTCACC TGCCTGACCT GGCCTGGCCT 
    GGCCCCCAAT CAAAAACGAG CGACCTCAAC CGACGGAATC CCCAACCCCA
    ACCCCCAAAA CCAATCCGCC GCCGCGCTGC CTCGCCTCGC TCGTCGCTCC
    CACCACCACC ACAAACCCGC GCCTCCTCCG CCGCCGCACG CCCGCCCGCC
    GACGAATCAG AGTTTGGATT TAATATTACA GGCGCAGCCA TGTTCAACAG
    GCTCTTTGGT AAGCCCAAGG AGCAGGCCAA TGCTAGTGCG TTGGCCACGC
    TTGATAAGTT AAATGAGACC CTTGACATGC TGGAGAAGAA GGAGAAAGTC
    TTAGAGAAAA AGGCAGCCGC AGAACTGGAG AGGGCTAAGG AGTTCTCAAA
    AGCAAAGAAT AAAAGAGCGG CTATCCAATC CTTGAAGAGA AAAAAGCTTT
    ATGAACAACA AATTGAGCAG CTAGGGAACT TCCAGTTGAG AATTCATGAT
    CAGATGATCA TGTTAGAAGC TGCAAAAGCT ACGACAGAAA CCGTTGATGC
    TTTGAGGACT GGAGCTGCAG CTATGAAAGC AATGCAAAAG GCGACAAATA
    TTGATGACGT TGATAAGACT ATGGATGAAA TTAATGAACA GACTGAAAAC
    ATGAAACAAA TACAAGATGC TTTGTCAGCC CCTCTTGGAG CATCTGCTGA
    TTTTGATGAG GACGAACTAG AGGCAGAACT GGAAGAACTG GAGGGAGCAG
    AATTGGAATC TCAGCTTCTC GAGCCTGTTG CAGCTCCACC TGTGCATCCA
    GTGCAGGTCC CAGGCACCAG GATACCAACT CGCCCTGCTC CACAGAAAGC
    ATCAGCTGAG GAGGATGAGC TTGCAGCCTT GCAAGCTGAA ATGGCATTGT
    GATCAGGTTC ACAATGAAGA GACGAAATGT ACAAATGATT GGCTGTGCTC
    TACGGAATTT CAACGAGTCT AGCTACAATA TAATTTCCCA TGTGTGTACA
    ATCTTTGGGG ATAGTCAGCA ATCAAAGAGA GATGCTGCTT CAGTCCAGTA
    CTCCAGTGTT CTGTTTTAGT GGCTTGGGGG GTGTCGTCTG TTTTCCTTGC
    ACATAATTTA AGTTAATCTG GCACAGTAAG CTCCAAGCTA ATCCATAGTC
    ATGCAATGTG CATTGCTGTC GCACAATATT TTTCATTGAC CATGAAGCCG
    TGTAAAACAA GTTGAAGCGA TTG

    Gene models with high sequence identity

    1. AT2G19830.1 [+] show detail - SNF7 family protein
      E-value: 1e-54; Score: 210.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SNF7 - RELATED 1e-24
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Snf7 6.8e-44

    See the detailed result >

    AT2G19830.1

    Model type
    Protein coding
    Short Description
    SNF7 family protein
    Computational Description
    SNF7.2; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT III complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT4G29160.3); Has 1789 Blast hits to 1789 proteins in 248 species: Archae - 16; Bacteria - 15; Metazoa - 681; Fungi - 406; Plants - 433; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR