K11127

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11127

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11127

Determination of introduced cDNA(s)

  • J013095P22 - Rice Full-length cDNAs - Original: J013095P22

    full reading [+] show sequence

    Nucleotide sequence: J013095P22 - full reading 
    GGCAAATTTG CAAATGCTGC ATGCCGGGCG TCTCTTCTTC TCTGTGTATC 
    CCTTGTTCTT TTGATATTTT GAATCCGTTT GTACAGGGAT GTATTTTCGG 
    GTTCTTGGAG CAGCCAAAGC AGATGGCTTC TTCCGGCTAC GGCGGAGAGA 
    GGCTACAGCC TGATCGACGA GGCCGGCCAA CTTTTTTTTT CCAGTGAATT 
    GCATGCATGT AAGTAGCAAA CAACAGCTGA CGCTGGGTTC CTGAATCCTA 
    TGGCTTGGCA GAACACGGCT CCGGCACCAA TGCCCGGCAT GCAAGGGTGG 
    CAGGCGGTGG CGTTCCGCAT CTCCGGCGAC AAGGCCTTCT TCTTCGGCTG 
    CGGGTTCTAC GGCGCCCAGG ACACGCTCTG CGACGACGCC GGCCGGCACT 
    ACTTCCGCGA CTGCTACATC GAGGGCTCCA TCGACTTCGT CTTCGGCAAC 
    GGCCGCTCCC TCTACAAGGA CTGCGAGCTG CACTCGACGG CGCAGCGGTT 
    CGGCTCGGTG GCGGCGCAGG GGCGGCACGA CCCGTGCGAG CGCACCGGCT 
    TCGCCTTCGT CAACTGCCGG GTCACCGGCA CTGGCCGCCT CTACGTCGGC 
    CGTGCCATGG GCCAGTACTC GCGGATCGTC TACGCCTACA CCTACTTCGA 
    CAGCGTCATC GCCCCCGGCG GCTGGGACGA CTGGGACCAC GCCAGCAACA 
    AGAGCATGAC GGCGTTCTTC GGGATGTACA GGAACTGGGG GCCCGGCGCC 
    GACGCGGTGC ACGGCGTGCC GTGGGCGCGG GAGCTCGACT ACTTCGCCGC 
    GCGCCCCTTC CTCGGCAAGA GCTTCGTCAA CGGATTCCAC TGGCTTACAC 
    CTGACGTCTG AAAGCCGTTT TTCGGCACCA CAATTAATTT ACTGGAGACA 
    AGAACGTACA TTTGTTAGTA CAGCAAAAGC GAAGAATAGA ACATTACGAT 
    AAATATAAAG TATTGAAGTG ACTAGTGCAG TATATAGCGG TAGATTCATT 
    CGTTCATTCG TTTTGTCTGA TCCGGCTTAT AATGATAGCT GCTATAGAAT 
    TCAAGCACAG CTCTTTACAA GATCTATAGT AGCTATGTAG TACTGTTTTA 
    AAAGCTTTGT CATGTAGACA TGTACCCATG CATGTGAGGT GAATAGTGAA 
    TATATAATTG ATTTTGTTGT TACTTT

    Gene models with high sequence identity

    1. AT5G47500.1 [+] show detail - Pectin lyase-like superfamily protein
      E-value: 8e-97; Score: 350.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Pectin lyase fold 1.4e-60
    HMMPfam Pectinesterase, catalytic 5.8e-42
    PatternScan Pectinesterase, active site 0
    superfamily Pectin lyase fold/virulence factor 1.8e-50

    See the detailed result >

    AT5G47500.1

    Model type
    Protein coding
    Short Description
    Pectin lyase-like superfamily protein
    Computational Description
    Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G19730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR