K11130

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11130

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11130

Determination of introduced cDNA(s)

  • J033072G12 - Rice Full-length cDNAs - Original: J033072G12

    full reading [+] show sequence

    Nucleotide sequence: J033072G12 - full reading 
    GCTCCGCGAT CCGCCTCCGC CTCGAGCCCA AACCCACCCA CCAACCCAAC 
    CCAATCCCAT CGAGAGGAGG GGACGCGGCG GCGGCGGCGG ATCGGCGGCG 
    GGGGAAGGAA GGGGATGGGC GGCGGAGGCG GGGAGTAGGA CGGCGTCGTC 
    GGCGAGCGGC AGCGCGAGGA GGACGAGGAG GAGGAGGAGG CGAnGGGCAC 
    CATGTCTGCG GTAGTCTGTG GCAAGAGGTC CTCCGCCATC TTCGCCGACG 
    ACCTCCTCCC GCCGTCCCCT CCCTCTCCTC ACTCCCACCA CCATCCGGCC 
    AAGAGGTCCT GCCGCTCCCC TCACCGCCGC CGGGAGGCCC ACCTCCACCA 
    CCTCTCCTCC TTGTTCCCGG GCATGGATCC CCAGTTGCTC GAAGGAGCTC 
    TTGATGCTTC TGGAGATGAT TTGGATTCAG CAATAAAGAG TTTAAACAAT 
    CTGCGCTTGG AGTCTACAGA GGCTATCTTA TCAGCTACTG GTTGCAAATC 
    TGAAAATGGG CTCCCCACAG CAGTTTATCC GTCTGTTGAA GGTATTGTTA 
    ATAATGGTGG TGTGAGTACA GCTAATGAAC ACCCAGCTGC TGCAGATAGT 
    TGCCAGACAG GTAATAATGG TTCTGAATGG GTTGAGCTAT TTGTCAGAGA 
    GATGACAAAT GCATCTGACA TGGGCGATGC GCGTGCTCGC GCCTCAAGAG 
    CTTTAGAAGT TTTGGAGAAG TCAATCGTGG AGCGTACAGG AGCTGATGCA 
    GCACAAAACT TGCAAAAGGA AAATATGATG CTTAAGGAGC AATTGACCGT 
    CGTGCTGCGA GAGAACGCTG TCCTCAAGCG AGCGGTCGCC ATTCAACATG 
    AGCGCCAAAA GGAGTTCGAC GAGAGGAGCC AGGAGGTTCA GAGTTTGAAG 
    CAACTTGTTG TGCAGTACCA GGAGCAACTG AGGACCCTAG AGATAAACAA 
    CTATGCGCTG ACGATGCATC TGAAGCAGGC TCAGCAGAAC AACTCCATCC 
    CCGGGCACTT CAATCCTGAC GTCTTCTAAC TTTTGCCGCA AGACGGTCTG 
    TCCAGAATAA TAATCTCTGA AGATGTCATG TGTTGTTGGT GGGAAATGAA 
    TAATAATCTC TGAAGATGTC ATGTGTTGTG TTGTTGGTGG GAAATTGCCC 
    ACTGCCTCTG CGATAGGAGA TCAAAATTGT CGTGTTATTA CACCGTTGAA 
    TTTACCATCA AACTTGTTTA GACTAAATCA CCAGGGGGGA GAGCTTCCCC 
    ACCTGAATTT TGTCATTGCA TAGAGGATGA AAAGTTCATT ACAACATATT 
    TAGAGTTTGT AGTGGGGAGG AGAAAATTTC TTTCCAAACG GAGACTACAT 
    GTCGGTCTTC AATCTTAAGA TTCTCTGCCC AGAGAGCTGC CTCGCGGATG 
    CAACGTTGCA GGCAGGATCC AATCGAGGGG GTTTATTTCT TGAAAATGAC 
    ATCATG

    Gene models with high sequence identity

    1. AT5G32440.3 [+] show detail - Ubiquitin system component Cue protein
      E-value: 3e-58; Score: 223.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ubiquitin system component Cue 1.2e-06
    Coil coiled-coil 0
    Coil coiled-coil 0
    superfamily UBA-like 6.2e-07
    ProfileScan Ubiquitin system component Cue 13.211

    See the detailed result >

    AT5G32440.3

    Model type
    Protein coding
    Short Description
    Ubiquitin system component Cue protein
    Computational Description
    Ubiquitin system component Cue protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80040.1).
    Link
    InterPro Scan - TAIR