K11136

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11136

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11136

Determination of introduced cDNA(s)

  • J033145G16 - Rice Full-length cDNAs - Original: J033145G16

    full reading [+] show sequence

    Nucleotide sequence: J033145G16 - full reading 
    GTGCCGAACA CCCGTACACG TCTGAGGGGT GGGCCCGACC CGGTTCCGCC 
    GGCTCGTCCC CCCGCTTTCC CCTCGCCTTC TTCATCCCCC TCCTCCCTCT 
    CCATTCCTGG ATCTCCTCCG CCTCCGCCTC CGCCTCCGCC TCCCTCGCAA 
    GGGGTCTCCC ACGCATCGCC GCCCGCCGCT GACGCGTGGG ACCCACCCCT 
    TCCCCCCCCC CCCCACACCA CCCGCCGCTT CCCATCTCCG ACAAGCGCCT 
    ACAACGCCGC AAGTAGCCCT AACCCTAGGT CGCTGGATGC GCCGATGGCC 
    GCCGCCGCCG CAGCCTGCGT AGAGAGCCCC GACGAGGGCG TGGAGATCCG 
    GGAGGTATGG GCGGGGAACC TGGAGGCGGA GATCGCGGCG ATCCGCGACG 
    AGGTCGACCG GTACCCGTAC GTCGCCATGG ACACGGAGTT CCCGGGCATC 
    GTGTGCCGCC CCGTCGGCAA CTTCCGCACC ACCGACGAGT TCAACTACGC 
    CAACCTCGAG GCCAACGTCA ACATGCTCAA GCTCATCCAG CTCGGCCTCA 
    CCCTCTCCGA CGAGGGCGGC GACCTCCCGC GGCGGGGGAC GGGGGGCAGG 
    CGCTGCATCT GGCAGTTCAA CTTCCGCGGG TTCGACCCCC GGACCGACCC 
    GTCCAACGCC GACTCCATCC AGATGCTCCG CACCTGCGGC ATCGACTTCG 
    ATCGGTTCGC CGCTGAGGGG GCCGACCCGA TCCGCTTCGC CGAGCTGCTC 
    ATGTCGTCGG GCGTCGTGCT CAACGCCGAC GTGCAGTGGA TCACCTTCCA 
    CAGCGGGTAC GACTTCGGTT ACCTGCTCAG GCTGCTCACC GGCCGGAACC 
    TGCCGGACAA CATGCCCGCC TTCTTTGACC TCATCAGAAT CTACTTCCCG 
    GTGCTCTACG ACATCAAGCA CCTCATGAGG TTCTGCAGCA ACCTCCACGG 
    CGGCCTGAGC AGGCTCGGTG AGCTTCTTGA TGTCAAGCGT GTGGGGACCT 
    GCCACCAGGC CGGCTCTGAC TCGCTGTTGA CCCTCGGGTG CTACAACAAG 
    ATCAAGGAGG TGTACTTCAA AGGATCGACC GAGAAGCATG CCGGTGTGTT 
    GTATGGGCTT GTTATTGAGG ATGGGGTGAA CAGACCACCA CCAACTCAGC 
    CCAATGAATG AATATGGTTA GTTAAATAAA ACAATCTGAA ATGGGAAAAA 
    AAATTGAAAC TTTCGTTGGT GAAT

    Gene models with high sequence identity

    1. AT2G32070.1 [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
      E-value: 9e-97; Score: 350.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribonuclease CAF1 1e-57
    HMMPanther CCR4-ASSOCIATED FACTOR 4.4e-125
    superfamily Polynucleotidyl transferase, ribonuclease H fold 6.6e-102
    Gene3D no description 5.6e-99

    See the detailed result >

    AT2G32070.1

    Model type
    Protein coding
    Short Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    Computational Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G80780.2); Has 941 Blast hits to 931 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 149; Plants - 385; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR