K11138

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11138

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11138

Determination of introduced cDNA(s)

  • J023012K18 - Rice Full-length cDNAs - Original: J023012K18

    full reading [+] show sequence

    Nucleotide sequence: J023012K18 - full reading 
    TTTCTCAATC GCTCTCACCG CTTCGAGGAG AGAAAACATT TCTTGCTTGA 
    CGAGCTGAGC TGAGCTGAGC AGAGGAGCTC CCACCTTCTC TCCCTCTGTT 
    GCAAGGGATC TTTCGGAGAT TTTGTTAGTT CATGGCGGAG ATTTGCTGCG 
    AGGTTGTGGC TGGATCGTCG TCGGAGGGGA AGGGCCCGGA GTGCGACACC 
    GGGAGCCGAG CGGCGAGGCG GCGGCGGATG GAGATCCGGC GGCTCAGGGT 
    GGTCGCGGAG CGTGGGGCGG AGGAGGAGAC CTCCGGGAAG AGGCGGAGGC 
    TTGATGGCGG CGGGGGAGAG GCCTCGACGG ACGAGGAGGA CAGGGAGGTG 
    GAGCGCGCTA GGTACGGCTT TACGTCGGTG TGCGGACGCC GGAGGGACAT 
    GGAGGACTCC GTCTCCGCCT GCCCGGGGTT CCTCCCCGGC CACCACTTCT 
    TCGGGGTGTT CGACGGCCAC GGCTGCTCTC ATGTGGCGAC GTCGTGCGGG 
    CAGCGGATGC ACGAGATCGT GGTCGACGAG GCCGGCGCCG CCGCTGGGTC 
    GGCGGGGTTG GACGAGGAGG CGCGGTGGAG GGGCGTCATG GAGAGGAGCT 
    TCGCGCGGAT GGACGCGGAG GCCGTGGCCT CGTCACGGGG GAGCGTCGCC 
    CCGGCCCCCA CCTGCCGGTG CGAGATGCAG CTGCCCAAGT GCGACCACGT 
    CGGCTCAACG GCCGTCGTCG CCGTTCTGGG CCCTCGCCAC GTCGTCGTCG 
    CCAACTGCGG CGACTCGCGC GCCGTCCTCT GCCGCGGTGG CGCCGCCATA 
    CCCCTCTCAT GCGACCATAA GCCGGACCGG CCCGACGAGC TCGAACGGAT 
    CCACGCGGCG GGAGGGCGCG TCATCTTCTG GGACGGCGCC CGAGTCTTTG 
    GCATGCTCGC CATGTCACGA GCCATCGGGG ACAGCTATTT GAAGCCGTAC 
    GTGATATGCG ACCCGGAGGT GAGGGTGATG GAGAGGAAGG ACGGCGAGGA 
    CGAGTTCCTC ATCCTGGCCA GCGACGGCCT GTGGGACGTG GTGAGCAACG 
    AGGTTGCCTG CAACGTCGTG CGCGCCTGCC TGCGGAGCAG CGGGCGGCGC 
    GAGAGGAACC GGTCGAGCCC GACGTCCAAC CTAAGCCCGA GGCAGAGCAG 
    CAGCAGCGGC GACGAGGCGC CCAACGACGG TGCTCCTTCC GCCGCCGCTG 
    GCTCGGAGAG CGACGAGGAG AGCGCCGCCG AGGAGGACAA GGCGTGCGCC 
    GAGGCGGCCG TCCTGCTGAC CAAGCTGGCT TTGGCGCGGC AAACCTCGGA 
    CAATGTCAGC GTCGTCGTCG TAAATCTCAG GCGCCGGAAA TTGTGACAAG 
    TGGATCCATC AGACATACTA CTCCTCTCGG TTTCCTGGCC ATCTCTAACT 
    CGAATTCACC TGGACGAAGC CGTGATCAAA CAGAACGTTC CGAATTATGT 
    GATCAAACAG AATGTGGCAT CCTCAAAGCA TATAATTGCA GATTATTATA 
    GCATTATTTC GTTCACTTCC TTTCTTTGGG CGTTTGTGAT CTCGTCAGAC 
    AGATCAGCCC GCTCCTTATT TCAGCAAAAA AAGCTCATGT GTTTCCGATG 
    TTTGAAGAGA AACTTCCTCA AGCGTCAGAG AAATTGTAGT ATAATTGAGT 
    GTCCCCTTTG CTCGTG

    Gene models with high sequence identity

    1. AT1G07430.1 [+] show detail - highly ABA-induced PP2C gene 2
      E-value: 8e-80; Score: 295.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Protein phosphatase 2C-related 5.6e-90
    superfamily Protein phosphatase 2C-related 7.9e-74
    PatternScan Protein phosphatase 2C, manganese/magnesium aspartate binding site 0
    HMMPfam Protein phosphatase 2C, N-terminal 2.1e-59
    Gene3D Protein phosphatase 2C-related 3.7e-72
    HMMPanther PROTEIN PHOSPHATASE 2C EPSILON 2.4e-117
    HMMPanther Protein phosphatase 2C 2.4e-117

    See the detailed result >

    AT1G07430.1

    Model type
    Protein coding
    Short Description
    highly ABA-induced PP2C gene 2
    Computational Description
    highly ABA-induced PP2C gene 2 (HAI2); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: highly ABA-induced PP2C gene 3 (TAIR:AT2G29380.1); Has 6753 Blast hits to 6737 proteins in 407 species: Archae - 6; Bacteria - 193; Metazoa - 1700; Fungi - 794; Plants - 2782; Viruses - 7; Other Eukaryotes - 1271 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR