K11203

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11203

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11203

Determination of introduced cDNA(s)

  • J013116I07 - Rice Full-length cDNAs - Original: J013116I07

    full reading [+] show sequence

    Nucleotide sequence: J013116I07 - full reading 
    GTCCGCTCCT TGCGCCATCT CGCGGCTGAA CAGGGGAGGG GCGGCGATCT 
    CCATCCGGCG AGCGGAGCAG GGGAGGGGAG GGGATCTTGA CAATGGTTGG 
    ACCTGGGCAT AGGAACAGTC ACGGGAAGCG TCACTCTGAT TATGCTGAAA 
    ATGGAGGTGG CAAGAGAAGG AATCCTGGTG ATGATACATA TGCTCCTGGT 
    CCAGATGATA CTGTCTACCG CTATCTTTGC CCTTCTAGAA AAATAGGGAG 
    CATCATTGGG AGGGGTGGAG AAATTGCTAA GCAGATGAGG GCCGACACTC 
    AAGCTAAGAT AAGGATTGGT GAGAGTGTAT CTGGTTGTGA TGAGAGAGTT 
    ATCACAATAT TTAGCTCAAG CAGGGAAACT AATACCCTAG TAGATGCTGA 
    AGATAAGGTT TGCCCTGCCC AAGACGCTCT CTTTAGAGTT CATGAAAAGC 
    TATCCATAGA TGATGATATT GGGAATGAAG AAAGTGATGA AGGTTTAGCT 
    CAAGTTACCG TTCGGTTGCT TGTGCCATCA GACCAGATTG GATGCATTAT 
    TGGAAAAGGT GGGCATATTA TACAGGGAAT CCGCAGTGAC ACTGGTGCTC 
    ATATACGTGT TCTTAGCAAT GAAAATCTCC CTGCGTGTGC CATCAGTGGT 
    GATGAACTTC TTCAGATATC TGGGGACTCA ACAGTTGTCA GAAAAGCTCT 
    TCTTCAAGTG TCATCTCGTC TCCATGACAA CCCATCTAGG TCACAGCATC 
    TTCTTGCATC CAGCATGACA CAGCCTTATC CAGTGGGCTC CCACCTTGGT 
    AGTTCCTCAA CTGCACCAGT TGTGGGGATT ACGCCTTTAA TTAGTTCTTA 
    TGGAGGATAC AAAGGTGATG TGGCTGGAGA TTGGCCTTCT ATATATCAAC 
    CACGGAGGGA GGAGAGCTCT GCAAAGGAAT TTAGCTTGCG CCTTCTTTGT 
    GCTGCATCAA ATGTGGGAGG TGTAATTGGA AAGGGTGGTG GAATTATCAA 
    ACAGATTAGG CAGGAGTCTG GAGCCTTTAT CAAAGTTGAT AGTTCAAATA 
    CTGAAGATGA CTGCATAATT ACTGTTTCTG CAAAGGAGTT CTTTGAAGAT 
    CCTGTCTCCC CAACAATAAA TGCTGCAGTT CATTTACAAC CAAGATGCAG 
    TGAGAAAACT GATCCGGAAT CAGCGATCCC GTCTTACACA ACACGCTTGT 
    TGGTGTCGAC ATCACGTATT GGGTGCTTGA TTGGAAAAGG TGGTTCAATC 
    ATTACTGAGA TAAGGAGAAC ATCAAGAGCA AACATACGTA TCCTTTCTAA 
    GGAGAATGTA CCAAAAGTAG CAGCAGAAGA CGAAGAGATG GTTCAGATCA 
    GTGGAGACCT TGATGTTGTA AGACATGCTC TTCTGCAAAT AACTACTAGG 
    CTGAAAGCCA ATTTCTTTGA AAGAGAAGGT GCTTTATCAG GTTTCCCACC 
    TGTAATCCCT TACCATCCTC TTCCAGTTGG TGTTTCTGAA GGGCCAAAGT 
    ATCTAGGCAG AGATACTAAG CCTCTTGGGC ATGATTATCC ATATTCAAGT 
    GGATATCGTG GCTCAGATGA TATTGGCCCT ATTGACAGCT ATGCAAGTTA 
    TGGCAGCTCC CAGGTCTCTG GAGGAGGTTA TGGGGCTTAT GGTGGATATA 
    GTGGTCGTTC TGGCAGCAGT GGGTTATCTG GCCCTAGTTC ATTTTCCTAT 
    GGAAAGCGAC ATGGTTATTA GGACTTAGAT TGACAAATGC AACAGCCAAG 
    ACAAAAGAAT GCCAAGACCA ATGAAGTATG GAGCCTGCTT ATTGGAGCCC 
    CTTCCCAAAC CAGATGACCA AGAGTATGGC CCCAACCTGG AAGCTTTGCC 
    TAAGAGGGAC CTGCCTGGAT GCCATAGACC ATCTTATTTC CCTAGTATAC 
    AGCATTTACT TATATTTTCC TCTGGGACTA TGTTGATTCC CCGTCTTACA 
    TGTTCTAAAC CTATGTATTG AAAGTTCACA GTTGAGACTT CCTGTATGTG 
    TTCTCGTGCA ACCTGCTTCA TCTTAGTAGT TCGTGTGGAA GAACTTGGTT 
    CCCTGTTTGC CAACCAAAAG CCTAGAAGTT ACTTGCCCTT GCTTTAAGGA 
    TGTGGATCGT GTCATCCTTC ACATTCGTTC CTATCTGCAC ATAGTTCCCC 
    AGAGAAAATT GTACCTCCTC AGTGAGCTCA AAATAGGCTA ACATAAAACT 
    TAAGTTTACC TATAAACCAA TCTCAGCATG GTCTTCTAGT ATCAACCTGT 
    CTGGTAAGCT ATATGACTAC TATGGCGATT TACAGTTAGC TGGAAGTTTT 
    CGCTTTTGCT GATTTATAGA TCATAAAAGC CCTAACATGC AATTGTGCAA 
    GCCATGCTAT ACATGGGATC TTGACTTGAT GTGCACGTGT GCTCTGATGC 
    TCAATCTGAG TGTGGGTAAG TTTCAGAGAA CCTCTCAAAG TTAATAACTG 
    GGTTGAGATT TTATCGAGTT AAGAGTTTCC TTTGTGTTTT GGAGTCTTTT 
    CCTCTTCTTT ACCCTTCTCA TGGAGGTGCA GGAGCATACG CCGTGTGCTG 
    CTACTGCAGA CTTGTCCACT GCTATATGGA ACCACTGCTG GAGTTGCAGA 
    ACGTTGGTGC CATGCCATGC AGGGCATTTG TTAGTGTATT GCTGTAGACT 
    ATGATACATT TTCGATGTAG GCGGTAACAT GGCAAACAGT ATTGTGCTGC 
    TTTCAGTATA TTTCTTTTTT TTGGCCAAAT TTGTTTATGC ATGTAAAAGC 
    AATTCTCTCA ACATTGTATT TGAACAGTTT GGTCGAATTA GCCGATCATT 
    CTTATGTACT GATTGATGTC CACTGTTGTT GGTG

    Gene models with high sequence identity

    1. AT5G15270.2 [+] show detail - RNA-binding KH domain-containing protein
      E-value: 2e-133; Score: 473.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan K Homology, type 1 17.212
    ProfileScan K Homology, type 1 12.852
    ProfileScan K Homology, type 1 12.831
    ProfileScan K Homology, type 1 15.85
    Gene3D no description 0.0000003
    Gene3D no description 0.00000000000022
    Gene3D no description 0.0000037
    Gene3D no description 0.00000000000076
    HMMPfam K Homology, type 1, subgroup 0.00000000017
    HMMPfam K Homology, type 1, subgroup 0.000000000000042
    HMMPfam K Homology, type 1, subgroup 0.00000000041
    HMMPfam K Homology, type 1, subgroup 0.0000000000002
    HMMSmart K Homology 0.00000081
    HMMSmart K Homology 0.000000000068
    HMMSmart K Homology 0.00048
    HMMSmart K Homology 0.00000000051
    HMMPanther RNA-BINDING PROTEIN RELATED 9.5e-154
    HMMPanther RNA-BINDING PROTEIN RELATED 9.5e-154
    superfamily Eukaryotic type KH-domain (KH-domain type I) 0.0000000000000033
    superfamily Eukaryotic type KH-domain (KH-domain type I) 0.000000000000026
    superfamily Eukaryotic type KH-domain (KH-domain type I) 0.0000000000006
    superfamily Eukaryotic type KH-domain (KH-domain type I) 0.00000000078

    See the detailed result >

    AT5G15270.2

    Model type
    Protein coding
    Short Description
    RNA-binding KH domain-containing protein
    Computational Description
    RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT1G14170.3); Has 5625 Blast hits to 2559 proteins in 215 species: Archae - 0; Bacteria - 48; Metazoa - 3662; Fungi - 737; Plants - 967; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR