K11212

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11212

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11212

Determination of introduced cDNA(s)

  • J033133P06 - Rice Full-length cDNAs - Original: J033133P06

    full reading [+] show sequence

    Nucleotide sequence: J033133P06 - full reading
    GACGCCCTCC TCACTCTCGT CTCTCCCTCT CCCTCTCTCG CCGCCGCCGC 
    CTCGCGCCAT CGCCAACGCC GTCCCCGTCA CCTCGCGCCT GCGCCCTCGT
    CCCCGCCTCC GCCTCGCGTA GCCGTCGCGG TCGCCACTCC CTGCCACCAC
    GCCCTTCATC GCCCAATCGC CGTCCCTGAG CACGGGCTTC GAGGCGGACG
    CGGAGAAATC GAGGAGGCGA ACGCTCCTTC CTCTTCCCCT CTTGTCTCTC
    CTCTGCCTGC GAGGAGCGCT GCTTTGCCGC CGTCATCGCC GTCGTCACCT
    TGCCGGTCTA GCCGCTCGCT GCCATCAGAG TGGTCGGATC TGATGGTGGC
    GAGCACGTGG CTGTCGATTG TTTGGCGGTT GATGGAGCCA CCGTTGTCCT
    CCCACAAGCC GGTATCACCA TTTTCGCGTT GTAGTGGACA AGGGGCTCCA
    CGGTGGCGAC GAGCTCAACC TTGGCGGATT GAGCGATGGC GTCAACCTCG
    CCGGCGGCGC CGATAAATAG AGGCTTGCTG GATCTGATGG CGGCGAGGTC
    GTGGCCGCCA GATCCGGTAG CCTGGCGGCT AATGGAGGGG CTGTTGGTCT
    GGCGGATGGA GGTGCTCACT CTCCTCTCCG TCGTGCATTC ACGTTTAACT
    GGTGCTGCCG CCACCACCAT CGCCGGCACG GCAAGGCATC CACCTCCTCT
    GCACCATCCC CTTCCTCCTC ACACTTCTCT GCCAGCCTGA AGCACCATCG
    CCGGCACGGC AAGGCATCCA CCTCCTCTGC ACCATCCCCT TCCTCCTCAC
    ACTTCTCTGC CAGCCTGAAG CACCCCATGA GTATGGATCC CTCGATTTGG
    CGCTAGACCA TGACGCTGCC TCAAGCCCTC GCCGATGAGT TCACTGCCAC
    CGCCACCACT GCGCGGCCAG ACGACATGAT GCTCGTGAAT CGGATGCAAC
    GGCTTGCTCA CTAGGATAAC TGACATCGGC AGTTCATGCT AGAGCAGGAA
    CGGATATACA GGTACTGAAA ATACTGATTA TCCTGTGTGA GCTGTTCAAG
    AATTCAAAGA TGGGTTCATT CACAAGGAGG AGTTCCAGCT AGCACTCTTT
    AGGAACAGCA ACAAGAAGAA CCTTTTCGCT GATCGGATAT TTGATCTCTT
    TGATCTTAAG CGCAATGGCA TTACTGATTT CGGGGAGTTT GTTCAATCCA
    TTGACATTTT TCACCCGGAA ATGCCTTTGG CAGAGAAGAT TGCCTAGGCT
    GCAGGATTTG TACCTGTTGA GCCCATTTAA ATACTCTAGA GGAAATACTG
    GAGAAGAAGG TGGAGGAGGC CACCGAAAGG AAGTTTGATA GTTGTGCAAG
    AGCTCTTTTT TGGCTTAGTA GGTAAACTCA CACATAGCAT ATAATGGGCT
    TTAGTTCTTC TCTTATGGAG TTTTGCTACC TACAAATTTC AACCTTGCAT
    ACCTCTTCAT ATTAATAGTT ATCTTCTCTA ACATCACTAG ATGCATGGAT
    TCACTATTGC ACCGCAAAGC TTTGCACACC TTGTAGAAAC TGCATGCATG
    ATCATTCTGA AGTCATTGCA GCATTGGATC TCTTTAGCAA CCTATGATTG
    GTCAGGGTCC ATTGAATCTA AGTGTACCAT TTTTTTTTGT CGAAAATGAC
    TGTTTTTCCA TCGCACTTGT CCTGCACAAC TATGATTGTA TTGATACTGA
    ATTCACCTTA CAAAGATCAA AATATTTGCT TTTAGTGAAG TTGCATATTA
    TCTGCTCATT TTTCAGGCCA AGTTTAGATT AGACAGGCTG AAATCAACTT
    GATGGCAAGT CTAAAATGGT TGTTCCAATG TGTTATTATG TGATACTGCC
    TTGGTGAGCT GGTTTGTCTA TGCATAAAGA TTTTCCTTTT TGTGTCACAG
    TAGTATTACC ACGTGTCTAT GGATCACTCT GTAAATGTCA GAATAAAACC
    CCACGTATAC TAGCTTGGAT ATAGGCGTGG TTTCAATGCA GTTCCAAGAA
    TCCACATAAG TTTTATCATC CATTTCCAAA TTATTCATCC ACATTTGCAT
    TTCAAATTAA TTTACAGTAA CACAAATCAA GATCTGTGCT TAAAAAGTTA
    TAATTGTCTT TAGTACCTCA TAGCTGTTAT ATTACTCTCA TTTCTCCTCC
    ATTGCATTAC GGAGAAATAT CTTCATTGTC ATGATTTTGG ACATGTCTTT
    ATGTTTAAAA TAGCATCTGT TGTATGTGCT TGTTTAATTT ATACTAGCAG
    TGCTGTTGTA CATGAATGAC CATATGTACA TTAGAAAATA TGAAGTTCTT
    TGTACTTAGT CCTTACCATT GGGTTCGACA ATATGTTGTC TGTACAGTAC
    CTGGCTTGTA TTAACGGCAA GGCTATGATA TCCTTTATGT ATTGAAATTA
    CCATCCTACA TGTTCATGGC TCCTTTTTAT TTGCTTATTC CTGTTTATAA
    AAAAAGATGC AATTCTCTCT TTACATTTGT TGACTTTTGA TCAATCAAAT
    TATATAGGAC GAGTTGTATA CAGGAGGCGC AAAAGGGTGC GACCCAGAGC
    AACAACATTG TTTATGGAAC AGTTTCTATT TGCATTGTAA TAAACAATCT
    TACATCTTCA CGACTTGAAA TTCTTTAGTT GATGGCCTCC AATCTAAATA
    GTTCTTAACA TGTTACCAGT TACTGCTTTC TACAAAGTTA TATTTCTGAA
    TGGTGTTTTT CCCAGAATTC AGAATCTTAA AATCTGTGCT ACTGGAAGAG
    TTATTATTTC AGTTTGTTTA ATTAAAATCA ACTTCACTGC ACCACATAGG
    CACATGCTAT GAATCTACTA GAGTATGACC ATGTAGCATT TGTCCATGGC
    CTTGAATTTG TTGATGATTT TTTTTGTAAG CATTGAAGTT CTTCTGATGG
    TCTGATTTGA CTACTGCCTT AATTTGCTGA GAGGAAAAAT TCTGAACGGA
    GATTCAACAA TTCAATCAGA GGAAAAAAAA TATCAGCAGA CAGTTCTTGA
    AATTTCATCA TCTGCACCAG TTGTGAGAGA ACTCTTTAGT CCTATTCTTT
    TGTGCCTTGA AAGTTCGCGT TTCTAAAATA CAAGTACTTC CTTTTGTGCT
    ATTGATTTGT AATATTTGGT GTCAGTCGTA CAATATCTGA CTAGGTCATT
    ATCATTTACA CAATAATTTT TATGGTCATT AACTGCAGAA TCGAAAGAAA
    GCAGAAACCA ACAATTTTGT TCTCCAAGGT TTGATCTATG ATCACAAGGG
    GACAAGTTAT TATTCTCAAG AGGATTGGGT AAGTGTCTCG AAAGTGATTC
    TCTTGTAGCC AAGCTTGTTA AACAAAAATC AAGGCCCACC TTGGCACTAA
    TGGATCTTAC AAGCTTGATA AACAAAAATC AAGGCCCACC TTGGCACTAA
    TGGATCTCCA TCCCCATCAA GGCCCACCTC GGCACTAATG GATCTCCATC
    CCCTGTTATG TGTAGTACTG TATTTCTGAT TTCCTAAAGT GGTCTTGGTG
    AAGGTTGATG ATTGCTTTCA CTAGTCTCGT TGTTTCTCTG TTTACTGAAT
    CATACTAAGA TATGACTGAC ATTTAATAGT TGAAATAAGC TTAGGCTTTT
    AGACCTTTCT TCCATTATGT GTATTGTATG CATTATTAAT GTATTAATAT
    TAAATTCTTT TTATGATAAC ATCCATGTTT AGTGACACTT AAAAAAGAAT
    CACGGAGAAA TTTAACCCTA CTGGATTTCC TCCTATGTAT CATGACCAAA
    TAACGAACCA TATCCTGTGC CATAAATATT TCTAATGAAA ATTAATATAG
    TAAGGATAAA ATTTGTCATA TAATATTAAT AGCCCTCTTT AGAGGACAAT
    TACATGCCTA CAATTTTCTT TTATGTACAT GTTTATGGAT TTCTTTTGCT
    GAGGTTGAGG AGAAGAGGAT TGAGAAGATT GGGAAGATAC ATAAAACGAG
    GCCCCACGGT TCCGACTGCG GAATATTATA CCCATAGATG GTGCTGAAAT
    TTGGTGGAGC TTTTGGTGAA GAAAAAGCAA TTGGTGGAGG ATAAGAAGCA
    GGGAGTGATT CCATTGAATG TTTGAAATGT TTGCTTTCAT TTTCTGTTTT
    CAGATTTCCT GAAGCAAGTT TAACCATACA TCACAAATGC CTAGCCCTTC
    GATGGAAACA TTTTTTTAAC AGTTTAAAGT GCAGCTATAC CTTTTCATCG

    Gene models with high sequence identity

    1. AT5G24270.2 [+] show detail - Calcium-binding EF-hand family protein
      E-value: 6e-21; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Calcineurin B protein 1.60000240695986e-26
    superfamily SSF47473 0.000000000219999900980707
    Gene3D EF-hand-like domain 0.00000000799999145876753
    HMMPanther PTHR23056 1.60000240695986e-26

    See the detailed result >

    AT5G24270.2

    Model type
    Protein coding
    Short Description
    Calcium-binding EF-hand family protein
    Curator Summary
    encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B. Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.
    Computational Description
    SALT OVERLY SENSITIVE 3 (SOS3); CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcineurin B-like protein 8 (TAIR:AT1G64480.1).
    Link
    InterPro Scan - TAIR