K11214

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11214

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11214

Determination of introduced cDNA(s)

  • J013070E06 - Rice Full-length cDNAs - Original: J013070E06

    full reading [+] show sequence

    Nucleotide sequence: J013070E06 - full reading 
    GATCGTCTCT CTTCCATTCT GCTTGAACTA CCGCCCGCGC CGCCGATGGC 
    CGCCGCCGCC GCGGCGACGT GGCGCCTCTG GAGGCCCTAC TCCTCCGCTC 
    TCCTCTCTCG CCGGGTGAAC CCGAGGTTCC TCCGTACTAC GCCGTGCGTC 
    TCCTACCCCG GCGGCGCCGC GGCTTCTGCG GCGCCACCCT CGCCTCCGCT 
    TGCCACCACC TGCTCCGACG ATTGGGGCGG CGGGATGAGG TGGGAGTCCG 
    CGCGGAAGAA GAGGGTCGTG CTCCGCGTAG GCTACGTCGG CACGGAGTAC 
    CGAGGTCTTC AGAAGCAGCG GGAGCTCAGC GCGGACTCGA CAATTGAGTC 
    AGTCTTGGAA ACAGCCATCT TCAAGGCTGG GGGCATTCTT GAGAGTAATT 
    ATGGGAAGCT GCAAAAAGTT GGCTGGGAAA GGAGTAGTAG AACTGATAAA 
    GGGGTACATT CACTGGCCAC AATGATCTCT CTGAAAATGG AAATCCCTGA 
    TCGAGCATGG GAGAATGATC CTGATGGCAT TGCTCTTTCA AACTTCATTA 
    ACTCAAATTT GCCAGACAAT GTTAGAGTTT TCAGTGTTTT GCTGCTCAAA 
    GGAGTTTCGA TGTGAGGAGG GAATGCTTGT ATCGGGAATA CTTGTATCTT 
    CTTCCTGCTG AAATAATTGG AATTAAAGGT GGTTGTAGCT CTGAAGAAGT 
    AATGGAACAC CTGTCAGAAT TCAATAGCAT TCTGAAAGGT TTTGAGGGAA 
    ACCATCCATT TCATAATTAC ACTGCTCGTG CCAAGTATAG GAAAGTTCTA 
    GCAGGAAGGC ATCGTAAGGT AAAAGGGGCA AGCTCAGCTG TAAATTCCAT 
    GCCCACTGAA ATGAGTTTGG ACCAAAGCTC CTCTGATGAC GGAACTACTT 
    CAGACCATGA TGAAGAAGAC TTGAACTCTT CGTCGATAAT TGGTTCTAGT 
    GTACCAGAAG ACAGTTATAA GGATAATCCC GAATTTTCTG AGAAGCAGGT 
    TCAGATTCGA GCTAGGTGGC TTCATGAGCC TGATGAAAAT GATCGACTGA 
    ATGCTTCACA TTTCAGAGAT ATCCTCACAT TCTCCTGTGG AGAGCTCCAG 
    ATTTCATCAG GAATTCAATT TGTGGAATTG ACTATATCAG GAGTATCTTT 
    CATGCTGCAT CAGATCCGGA AGATGGTTGG TACTTCGGTG GCGGTTAAGC 
    GTGGATTACT ACCCAAAGAT ATTATAGCAC TGTCTCTTGC AAAGTTTTCT 
    CGCATTGTGT TACCAATTGC CCCTTCTGAA GTTTTGGTGC TTAGAGATAA 
    CAGTTTCTGC CTGAGGAACA AGCAAGGGAC TATAGTTCGC CCTGGGATCC 
    AATCAATGAA TGAATCTGAA GAAGTCAAGA AGGGGGTAAT GGAATTCTAC 
    AGGGCAGCTC TTGTTCCAGA GCTAGCAAAC TTCCTGGATG CATCCATGCC 
    TCCATGGAAA GAATGGGTGG AGAACTTGGA CCGATTCACG AGCATACCAG 
    ATCCACAGCT GGAGGAAGTT AGGAGCGCTT ATAGGGTGTG GAAAGCGGAC 
    TACGACCGAG TAAAAATGGC CAGAAAGAGT GCCAGCAGCG ACTAATTTGT 
    TGCCAAGCCC ATCGCACAGT GAATGATGGG CTAAATAAAA TTCTTAGCTG 
    AAGAGAACCC CATGATTCTA TCTCGGATAT TTCTTCATAC AGGAGCAGGA 
    GCAGCCTGAC TGTCGGGCAG AGCCTTGTTT TGATCATGGC CAGTGAGCCA 
    TTGAGACTGA GCTATTGGTT GATCGGACTA CTACAACCTT CAGATTTGGT 
    TCAATTGAAT GTTTTTGCTT ACCGTTTTGC CTAAGCCAAT GTTATGTTGT 
    ATCCCGGCCA CTGCAAAATC TTTGCAGAGC AATACTCTGA TCAGTTGTTA 
    AAGGAAAACC GAAGGTAGAA ACATCGTTAA TTATCTGACG ATATTCAGGC

    Gene models with high sequence identity

    1. AT2G30320.1 [+] show detail - Pseudouridine synthase family protein
      E-value: 3e-112; Score: 166.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Pseudouridine synthase I, TruA, N-terminal 4e-11
    HMMPanther Pseudouridine synthase I, TruA 4e-18
    HMMPanther Pseudouridine synthase I, TruA 6.4e-21
    superfamily Pseudouridine synthase, catalytic domain 3.9e-17
    superfamily Pseudouridine synthase, catalytic domain 1.7e-14
    HMMPfam Pseudouridine synthase I, TruA, alpha/beta domain 6.1e-12

    See the detailed result >

    AT2G30320.1

    Model type
    Protein coding
    Short Description
    Pseudouridine synthase family protein
    Computational Description
    Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G76120.1); Has 2235 Blast hits to 2027 proteins in 681 species: Archae - 89; Bacteria - 873; Metazoa - 390; Fungi - 255; Plants - 163; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR