K11216

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11216

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11216

Determination of introduced cDNA(s)

  • J013055K24 - Rice Full-length cDNAs - Original: J013055K24

    full reading [+] show sequence

    Nucleotide sequence: J013055K24 - full reading 
    GGCCTTGAGA AAGATGGTGC TTCAAGCCTT CGACTCATCA TGGATTAGTT 
    GAGTTGACCA CCACCACCAC CACCACACCA CGACAGACGG GCCAATCCAC 
    CCAACCGTCT CCACTTCCCT CCCCACCGCG CCAAATTCCC ACCCCCTCCT 
    CCGCCGCCGC CGCCGCCGCA CGTGCGCCTC CACCTCCTCT CCATTGCCGC 
    CGCCGCGGCA CGGTCAACCA CCCCCACCCT TCGGCGGAGT CGCGGAGGAA 
    TGCGGGGGGG GCAATAGAAA ATTCGCTCGC TAGCAGTTGG CATGGCGGAT 
    TAGTTTAATC TTGAAGTCCT TGGTGGTGGT GGTGAGGAGG AGGGGGAGGA 
    GGAGGGGATT GGGCTGGCTA ATGGCCGGGT CCTCCTCCTC GTTTGGCTCG 
    CAGAGCAGAC CGCGACCCGG GTTTGAGGGG GGAGCAGCTC CGCGCCGCGC 
    TCGCGGTTGC TGGCTGAGGC CGCCGCCGCC TTCTCGGGTT GGGGGAGTGG 
    TTGGGGAGCC GTTGGGTTCT TCGCTGCTGG GGTTTTAGGG ATCCTAGGCT 
    GGCTTGCTTG CTTGCTCTTG GAGGAGGAGG AAGATCGTGG GGGTGGAGGG 
    TTTCTTGCGG GGGTTGGCCG GATTTTGATT CGTCGCCCGA GCGGGCTTGA 
    TACTGGAAAA AGGAGAAGCT TCCATTTTTT TTTTCTCTGA CTTGAAAGGG 
    GATGGCCTTC CCAGATGATG ATGAAAAGAT GAAGGGTTGC CGGCCAAAAC 
    TTTTTGGAAC AAAAGATAAG AAAGTTGTGA AGAGGGCAGA TTACCAAAGC 
    TGTTCTGCAG TTAAGTCCGG GCCAAGTTCC TCAAAGTCAC AATCTTCTTC 
    CCCCTTCAGA ACACTTACAG AAGTTAGGAG CATACGCCTC AGCCATTTAC 
    TTGGTCACTC TTCAAGTACT ACTAAAACTG AACCTTTCAG GATATTTGTA 
    TCTACATGGA ATGTCGGAGG AAACACGCCT ACTGCTGAAT TAAACCTGGA 
    TGACTTCCTT CCTGCTGATG ACAATTCAGA TATTTATGTT TTAGGTTTTC 
    AGGAAATTAT CCCTCTCAAT GCTGGTAATG TGCTTGTCGT AGAAGACAAT 
    GAACCAGCTG CAAGGTGGCT TGCTCTTATA AACCGAACGC TAAACAAACC 
    AGTTGACAGT AATGCTGATA TCTTCCAGCA CAAGCCATCT TCTTCCCTTG 
    ATTCAACCTC GTCTCTGTCT TCATCAAACC TTGATGCCTC ATTCTCCAGC 
    CGCACAAGAA CAGCTAGTGG TAGTTCTGCA ATCTTCCAGA AGTCCTCCTT 
    GAAGTCTATC AGGAAGCCTT ACATGCCAAC CCAGAGAAAA CTGCTCAAAC 
    TCTGCAATTG CTCAGTTGAG ATGACTAGGA AGTCCTACAA AGATGCTTGC 
    TTTGGATGTC CACAAGCATA TGCTAATGAG ACGGACTCTT CAGAAGATGA 
    TACAGATGAT AGATCGAATG ATCCTTGTGG TTATATAGTT GATGGAATGA 
    ATTCTGCTGC CTCTGCCTCC AGGGATCAGC TAAAATACAA CCTCGTATCG 
    TGCAAACGAA TGGTTGGGAT TTTTATCACG GTGTGGGCAA AGAAAGAACT 
    TGTGCATCAT ATAGGCCATG TGAGAACGTC TTGTATAGGT CGTGGAATAA 
    TGGGCTATCT GGGAAACAAG GGATGTATAT CAGTGAGCAT GACGGTGCAC 
    CAGACAAGTT TCTGCTTCAT CTGTAGCCAT TTGGCTTCAG GTGAGAAAGA 
    GGGTGATGAG CTGAGGCGGA ATTTAGATGT TTTAGAGATA CTGAGACTCA 
    CGCAATTTCA AAGGATTTGT AGAGCTGGGC GAAGAATTCC TGAGAAAATT 
    CTTGACCACG ATCGAGTGAT ATGGCTGGGA GATCTAAACT ACCGTATTTC 
    CTTGAGCTAT GAAGATACCA AGAAACTTCT TACTGAAAAT AACTGGGATG 
    CCCTTTTTGA AAAGGACCAG CTTAACATCG AGCGCAAGTC TGGAAGGGTG 
    TTCAAGGGTT GGAGTGAGGA GAAGATATAT TTTGCTCCCA CATACAAGTA 
    TTCTAGTAAC TCAGATTCTT ATGCTGGAGA GACTGCAACA TCAAAGAAAA 
    AGAGGAGAAC CCCCGCCTGG TGTGACAGAA TACTATGGCA TGGAGATGGC 
    ATTGTGCAGT TGTCCTACTT CCGTGGGGAG TCCAAATTTT CGGATCACCG 
    TCCTGTCTGT GGAACATTTA TTGTTGATGT TGAAATACAA GAGAGCAGAT 
    CAAAGAGGCG ATCATCTAAT ACCAACATCA GAATAGGTGC TGAAGAACTC 
    TTACCAACTA GTAAGAGTAA GGCTAATAAA AATAAGGGCA ATAAAGGTTC 
    TGGGACCTAA ACCCTATTGG AAATTAAATT GGTAGCAACA GCAACTTGTA 
    CTAAGATACT GAAGAATATT TCCATCGGCA CCTGTAGGTA TTTATTCCAA 
    AGCAGATTAT TTTTTTGTGA CAGGGGAAAG GTGATTACCA AGTCGTACAG 
    AAAATGTAGT GCATATATAC TTTCCAAAGG GAAAGGTGAT TATATTATAC 
    TCGAACAATT TTCCACATTC TTTTTGTTCT TTTGGGTAGA ACAAGTGTGC 
    CTATGCATAG CTATCCAGAA TCCATTGACC CCCTTGTATT ATTGTGTCTG 
    TCTGATCAGT TTGAACTTTT CTGTAACAAA ATTGTACTGA GAACGAGGCA 
    TTATTCCAAA ATGTACATTA TGTTATCTAT CTATC

    Gene models with high sequence identity

    1. AT5G04980.2 [+] show detail - DNAse I-like superfamily protein
      E-value: 4e-135; Score: 479.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Inositol polyphosphate related phosphatase 3.7e-49
    HMMPfam Endonuclease/exonuclease/phosphatase 7.6e-47
    Coil coiled-coil 0
    HMMPanther TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE, 4.2e-151
    HMMPanther INOSITOL 5-PHOSPHATASE 4.2e-151
    Gene3D no description 6.4e-105
    superfamily Endonuclease/exonuclease/phosphatase 7.3e-102

    See the detailed result >

    AT5G04980.2

    Model type
    Protein coding
    Short Description
    DNAse I-like superfamily protein
    Computational Description
    DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT5G65090.1); Has 2300 Blast hits to 2056 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 750; Fungi - 552; Plants - 689; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR