K11228

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11228

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11228

Determination of introduced cDNA(s)

J033133B12 - Rice Full-length cDNAs - Original: J033133B12

full reading [+] show sequence

GGGACTGCAC CTCGCAGTCC GGCATGGCTG GACAGATGCT ACCGCCGATT 
GCGCTTGTTG CTGTGGCCAT CTGTATCACC GCGGCGGCGG CGGCGAAGGT 
GCCGGCGATA TACGTGTTCG GCGACTCCAC GGCCGATGTC GGCAACAACA 
ACTACCTGAC CGGCGCCGCC GTGCCGCGGG CAAACTTCCC GCACAACGGC 
ATTGACTTCC CCACGTCGCG GCCCACCGGC CGGTTCAGCA ACGGGTACAA 
CGGCGTCGAC TTCTTGGCTC TTAACATGGG ATTCAGGCGC AGCCCCCCAC 
CGTTCCTCGC CGTGGCTAAC AAAACCAGCA ACCCATTGTT CAGGGGGCTC 
CAGGGAACAA ACTTTGCCTC TGCAGGATCA GGCATTCTCG ACTCAACAGG 
TCAATCCATC ATCCCAATGA GCAAGCAAGT GCAGCAATTC GCCGCCGTGC 
AACGCAACAT CTCAGCACGC ATCAGCCAGC AAGCCGCTGA CACCGTGCTG 
TCGAGATCCC TGTTCCTGAT CAGCACCGGC GGCAACGACA TCTTCGCCTT 
CTTCTCCGCG AACAGCACGC CGTCGTCCGC GGAGATGCAG CGGTTCGTCA 
CCAATCTCGT ATCGCTCTAC ACAAATCATG TCAAGGATCT GTACGTTCTC 
GGGGCGAGGA AGTTCGCCGT GATCGACGTC CCGCCGATCG GGTGCTGCCC 
CTACCCGAGA AGCCTGCAAC CGCTGGGCGC TTGCATCGAC GTCCTCAACG 
AGCTGGCCCG TGGGTTGAAC AAGGGAGTCA AGGACGCCAT GCACGGCCTC 
AGCGTGAGCT TCAGCGGCTT CAAGTACTCC ATCGGGAGCT CCCATGCCGT 
GGTGCAAAGC ATCATGAAGC ATCCCCAACG ACTCGGATTC AAGGAGGTCA 
CGACGGCTTG CTGCGGCTCC GGCAAGTTCA ACGGCGAGTC CGGGTGCACG 
CCGAACGCCA CGCTGTGCGA CAACCGGCAC GACTACCTCT TCTGGGACCT 
GCTGCACCCG ACGCACGCCA CGTCCAAGAT CGCCGCCGCG GCCATATACA 
ACGGCTCGGT CCGCTTCGCT GCGCCGATAA ATTTCAGGCA GCTGGTGGAT 
GACCAGCACT AGCTAGAGCG TGGCAGTGTC ACCGTGTAAC GTAGTACTAC 
TAATTGTTGT ACGTCGCCGA CTATGTGTCT GTTTGTCTGG TGATATTGGT 
GCGTAGGATA TGCTGGGCTG TGTTCATCAG TGGCTTGTGC TTTAGGCGGT 
GGTGTAGTTT GGATACACAT ACCAAAATGT CATCTCCGTT ATTATTGTTG 
CCCTTGTTGG CG

Gene models with high sequence identity

AT5G55050.1 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
E-value: 1e-52; Score: 204.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Lipase, GDSL	2e-20
HMMPanther	LATERAL SIGNALING TARGET PROTEIN 2	0.000000000000095
HMMPanther	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	0.000000000000095

See the detailed result >

AT5G55050.1

Model type: Protein coding
Short Description: GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description: GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G50400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR