K11232

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11232

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11232

Determination of introduced cDNA(s)

  • J013049H12 - Rice Full-length cDNAs - Original: J013049H12

    full reading [+] show sequence

    Nucleotide sequence: J013049H12 - full reading
    GATTGCTTCG TCTCGCGCCG GATCGATCCA GCTGCCGCCG CGTTCCGATC 
    CCCTCTGCTC TGGCTTGCTG ATAGATCGAT CGATCGATGA AGCCCGCCGG
    TGGGAGGAGC AAGGACGGCG GCGGCGGCGG GGCGGCATTG CTCGGCGGCG
    GCGGCGTCAC CTGCTTCGAC GTCAAGTCCT TCGTCGCCTC CCTCGCGCTC
    CTCACCCTCA TCATGGCGCT CTGGCAGCTC CACCCCTACC AGCCCCTCGT
    CCTCCTCCCC GCCGCCCTCT CCTCCTCCCC ATGCCCCCTC CTCCCCCGCT
    CACCCACCTC TGGTATTGCC GTTTCCTTCC TCTCCACCGC CGCTGCCACC
    AACTCGACTG ACACCGCCAC GGTCCCAACC ACCACCGCCG CCGCGAGGGT
    GGCGGCGACG ACGAGGCCGA CCCTGCCCGC GCGGCAGCGG GAGCGGGACC
    CAAACAAGCG GGAGCTCCGT CCGTACGGCA CGGCGGCGGC GCTGTTCGTC
    CAGATGGGCG CGTACCGGGG CGGCCCGCGC ACGTTCGCCG TCGTCGGGCT
    GGCATCCAAG CCAGCGCACG TCTTCAGCAA CCCTTACTTC AAGTGCGAGT
    GGCTGCCCAA CGCTCCCGCC GGCGCGCCGC CGGTCCGGAC CAAGGCCTAC
    AAGATGCTCC CGGACTGGGG CTACGGCCGC GTCTACACCG TCGTCGTCGT
    CAACTGCACC TTCCCCTCCA ACCCCAACGC CGACAACCTC GGCGGTAAGC
    TCCTCGTCCA CGCCTACTAC TCCACCGCCT CCCGCCGCTA CGAGCGCTTC
    GTCGCCCTCG AGGAGGCACC GGGCTCCTAC GACGACGCCC GATTCCGGCC
    ACCCTTCGCT TACGACTACC TCTACTGCGG CTCATCCCTC TACGGCAACC
    TAAGCTCCGC CCGCATGCGG GAGTGGCTCG CCTACCACGC CCGCTTCTTC
    GGGCCGAGGT CCCACTTCGT CCTCCACGAC GCCGGCGGCG TGACACCGGA
    GGTGAGGGCG GTGCTGGATC CGTGGGTCAG CGCCGGCCGC GTCACCGTCC
    AGGACATCAG GGCGCAGGAG GATTACGATG GCTACTACTA CAACCAGTTC
    CTCGTCGTCA ACGACTGCCT CCACCGCTAC CGGCACGCCG CGAACTGGAC
    CTTCTTCTTC GACGTCGACG AGTACATCTA CCTCCCCGAC GGCCGCGCGC
    TGGAGGACGT GCTCGCCCAG CTCCAGCCCT ACACGCAGTT CACCATCGAG
    CAGAACCCCA TGTCCAGCAA GCTCTGCATC GATGATCCGA CCGAGGACTA
    CTCGAGGGAA TGGGGCTTTG AGAAACTTGT CTTCCGCAAT TCAATTACCG
    GAGTGAGGCG TGATCGGAAA TATGCAATCC AAGCACGGAA TGCATACTCC
    ACTGGTGTGC ACATGTCGCA AAATGTGTAT GGGAGGACAA CTCACAAGAC
    AGAAAGCTTG ATAAGATACT ACCACTATCA TAATTCTATC AATGTCATGG
    GGGAGCCCTG CCGGAAATTC GTGCCGAAAC CCGCCAATGG CAGTAAGGTA
    ATGTTCGAGG GGATACCCTA CGTCTACGAT GATAACATGA AGCGCTTGGC
    AGGGGAGATC AGACGCTTTG AGAAGCAGAC GATTGGGGAT GTCCATACAT
    AGCATCTGGA TGCAAAACTT TGCTGGTACA TATATGATTT TATTCTTTCG
    GACGCCGTCG GCGGTGTCCA CCTGTTGCCG TCTGTTCTGT GCTTCAAGCC
    GCAACTCTGA GAATCAGAGG GAGAGGATCT AACTCCAGTG TCCAAGCAGC
    GCTGTAAAGT TATGGTTCTT TTCAGCATTC TCCTCTTCGT GCAGGGGGCA
    ACACGCCTTT GTGGCTCAAT ATCCTTTCTT TCCTTTGTTC CTTTCCCTTC
    TTCTCCCTAG TGTTGTGCTC CAATCTCTTT ATAGATTTGT GCTTATTAGA
    CTGACAGTGT GCCTTCATCA GATTCTTCTC ATCTCTTATT GGGGGCATTG
    TAAAGTTTGT CTCATTGTCT GCTAACTTAA TGGAAGGTTG GATCTTATAT
    AGTACC

    Gene models with high sequence identity

    1. AT2G33570.1 [+] show detail - Domain of unknown function (DUF23)
      E-value: 1e-166; Score: 583.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF23 1.7e-28
    HMMPanther UNCHARACTERIZED 1.1e-06

    See the detailed result >

    AT2G33570.1

    Model type
    Protein coding
    Short Description
    Domain of unknown function (DUF23)
    Computational Description
    Domain of unknown function (DUF23); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G44670.1); Has 195 Blast hits to 195 proteins in 24 species: Archae - 2; Bacteria - 7; Metazoa - 43; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR