K11232

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow) low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11232

Determination of introduced cDNA(s)

J013049H12 - Rice Full-length cDNAs - Original: J013049H12

full reading [+] show sequence

GATTGCTTCG TCTCGCGCCG GATCGATCCA GCTGCCGCCG CGTTCCGATC 
CCCTCTGCTC TGGCTTGCTG ATAGATCGAT CGATCGATGA AGCCCGCCGG 
TGGGAGGAGC AAGGACGGCG GCGGCGGCGG GGCGGCATTG CTCGGCGGCG 
GCGGCGTCAC CTGCTTCGAC GTCAAGTCCT TCGTCGCCTC CCTCGCGCTC 
CTCACCCTCA TCATGGCGCT CTGGCAGCTC CACCCCTACC AGCCCCTCGT 
CCTCCTCCCC GCCGCCCTCT CCTCCTCCCC ATGCCCCCTC CTCCCCCGCT 
CACCCACCTC TGGTATTGCC GTTTCCTTCC TCTCCACCGC CGCTGCCACC 
AACTCGACTG ACACCGCCAC GGTCCCAACC ACCACCGCCG CCGCGAGGGT 
GGCGGCGACG ACGAGGCCGA CCCTGCCCGC GCGGCAGCGG GAGCGGGACC 
CAAACAAGCG GGAGCTCCGT CCGTACGGCA CGGCGGCGGC GCTGTTCGTC 
CAGATGGGCG CGTACCGGGG CGGCCCGCGC ACGTTCGCCG TCGTCGGGCT 
GGCATCCAAG CCAGCGCACG TCTTCAGCAA CCCTTACTTC AAGTGCGAGT 
GGCTGCCCAA CGCTCCCGCC GGCGCGCCGC CGGTCCGGAC CAAGGCCTAC 
AAGATGCTCC CGGACTGGGG CTACGGCCGC GTCTACACCG TCGTCGTCGT 
CAACTGCACC TTCCCCTCCA ACCCCAACGC CGACAACCTC GGCGGTAAGC 
TCCTCGTCCA CGCCTACTAC TCCACCGCCT CCCGCCGCTA CGAGCGCTTC 
GTCGCCCTCG AGGAGGCACC GGGCTCCTAC GACGACGCCC GATTCCGGCC 
ACCCTTCGCT TACGACTACC TCTACTGCGG CTCATCCCTC TACGGCAACC 
TAAGCTCCGC CCGCATGCGG GAGTGGCTCG CCTACCACGC CCGCTTCTTC 
GGGCCGAGGT CCCACTTCGT CCTCCACGAC GCCGGCGGCG TGACACCGGA 
GGTGAGGGCG GTGCTGGATC CGTGGGTCAG CGCCGGCCGC GTCACCGTCC 
AGGACATCAG GGCGCAGGAG GATTACGATG GCTACTACTA CAACCAGTTC 
CTCGTCGTCA ACGACTGCCT CCACCGCTAC CGGCACGCCG CGAACTGGAC 
CTTCTTCTTC GACGTCGACG AGTACATCTA CCTCCCCGAC GGCCGCGCGC 
TGGAGGACGT GCTCGCCCAG CTCCAGCCCT ACACGCAGTT CACCATCGAG 
CAGAACCCCA TGTCCAGCAA GCTCTGCATC GATGATCCGA CCGAGGACTA 
CTCGAGGGAA TGGGGCTTTG AGAAACTTGT CTTCCGCAAT TCAATTACCG 
GAGTGAGGCG TGATCGGAAA TATGCAATCC AAGCACGGAA TGCATACTCC 
ACTGGTGTGC ACATGTCGCA AAATGTGTAT GGGAGGACAA CTCACAAGAC 
AGAAAGCTTG ATAAGATACT ACCACTATCA TAATTCTATC AATGTCATGG 
GGGAGCCCTG CCGGAAATTC GTGCCGAAAC CCGCCAATGG CAGTAAGGTA 
ATGTTCGAGG GGATACCCTA CGTCTACGAT GATAACATGA AGCGCTTGGC 
AGGGGAGATC AGACGCTTTG AGAAGCAGAC GATTGGGGAT GTCCATACAT 
AGCATCTGGA TGCAAAACTT TGCTGGTACA TATATGATTT TATTCTTTCG 
GACGCCGTCG GCGGTGTCCA CCTGTTGCCG TCTGTTCTGT GCTTCAAGCC 
GCAACTCTGA GAATCAGAGG GAGAGGATCT AACTCCAGTG TCCAAGCAGC 
GCTGTAAAGT TATGGTTCTT TTCAGCATTC TCCTCTTCGT GCAGGGGGCA 
ACACGCCTTT GTGGCTCAAT ATCCTTTCTT TCCTTTGTTC CTTTCCCTTC 
TTCTCCCTAG TGTTGTGCTC CAATCTCTTT ATAGATTTGT GCTTATTAGA 
CTGACAGTGT GCCTTCATCA GATTCTTCTC ATCTCTTATT GGGGGCATTG 
TAAAGTTTGT CTCATTGTCT GCTAACTTAA TGGAAGGTTG GATCTTATAT 
AGTACC

Gene models with high sequence identity

AT2G33570.1 [+] show detail - Domain of unknown function (DUF23)
E-value: 1e-166; Score: 583.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF23	1.7e-28
HMMPanther	UNCHARACTERIZED	1.1e-06

See the detailed result >

AT2G33570.1

Model type: Protein coding
Short Description: Domain of unknown function (DUF23)
Computational Description: Domain of unknown function (DUF23); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G44670.1); Has 195 Blast hits to 195 proteins in 24 species: Archae - 2; Bacteria - 7; Metazoa - 43; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR