K11323

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11323

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11323

Determination of introduced cDNA(s)

  • J033044B03 - Rice Full-length cDNAs - Original: J033044B03

    full reading [+] show sequence

    Nucleotide sequence: J033044B03 - full reading 
    GGTGACTCTT GGTTCGCTTT GGGTCATTCC GTTCCGCCGC ATCCTCCTCT 
    GCCGTAGCTT TAGGTTTTAC CTCCTCTCCC GACTCTCCTC CGCTTTAATC 
    GCACCGCCGG CCGCCGGCGA CCATGTTCAA AAAGTTCTCT TTTGAAGATA 
    TATCTGCGCA GAATCAAGTT AAGGCCTCTG TGCAGCGGAA GATTCGGCAA 
    AGTATTGCTG ATGAGTACCC TGGCCTCGAA CCTCTACTAG ATGACTTACT 
    TCCAAAGAAG TCGCCTATGA TTGTTGTTAA ATGCCAAAAT CATCTGAATC 
    TTGTGGTGGT GAATAATGTC CCACTGTTTT TCAATATCCG TGATGGTCCT 
    TACATGCCAA CCTTGCGCCT TCTTCATCAG TATCCTGACA TCATGAAGAA 
    GTTCCAAGTG GATAGAGGCG CTATCAAGTT TGTTCTCTCT GGTGCAAACA 
    TAATGTGTCC TGGATTGACA TCTCCAGGTG GTTCCTTGGA TGTTGAAGTT 
    GAGGAGGAAA CACCAGTGGC TATAATGGCT GAAGGCAAAC AGCATGCATT 
    GGCAATTGGA TATACAAAGA TGTCAGCAAA GGACATTAAG ACTATCAACA 
    AAGGAATTGG AGTTGACAAT ATGCACTATC TAAATGATGG CCTGTGGAAG 
    ATGGAACGGC TCGAATAAGT AAAATCCACT AGGGAAGCAT AATTTGCTGC 
    GCCATATTGA AATGTAATGA GGGCTGGAAT TATGTATCAA TGCATCTTGT 
    GTCATGTAAA CACATAAAAT AGCCAGCAGC TACATGGTGC TCCAAGCCTG 
    TTCGAGTTTA CTGTGACCAT CAAGTTTTGG AGATGTTTGG CAAAACTTTG 
    ACTGATAGTG CTGTGTTCAA CGCTTCACTT GGTATTATCA ATCCAGAACA 
    CTGTACAATG TTGGTAATCC TATCACTAAT GATTTGCACT TATTACCAAT 
    AAAATTTCAG ATGAGCT

    Gene models with high sequence identity

    1. AT1G09150.1 [+] show detail - pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein
      E-value: 5e-70; Score: 261.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MCT-1 PROTEIN 1.7e-87
    HMMPIR Translation machinery-associated RNA binding protein, predicted 8.8e-51
    HMMSmart Pseudouridine synthase/archaeosine transglycosylase 0.0000000000009
    HMMPfam Pseudouridine synthase/archaeosine transglycosylase 9.1e-21
    superfamily Pseudouridine synthase/archaeosine transglycosylase-like 7.7e-21
    HMMTigr Uncharacterised domain 2 1.1e-26
    ProfileScan Pseudouridine synthase/archaeosine transglycosylase 14.501
    Gene3D no description 2.4e-20

    See the detailed result >

    AT1G09150.1

    Model type
    Protein coding
    Short Description
    pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein
    Computational Description
    pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Translation-associated RNA-binding, predicted (InterPro:IPR016437), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1 family protein (TAIR:AT1G71350.1); Has 885 Blast hits to 883 proteins in 291 species: Archae - 148; Bacteria - 0; Metazoa - 325; Fungi - 155; Plants - 86; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR