K11329

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11329

Determination of introduced cDNA(s)

J023099C15 - Rice Full-length cDNAs - Original: J023099C15

full reading [+] show sequence

GGCCTCGCCT CTTCTCGCGG CCAACGAGAG AGGGAGAGGG AGAGCTAGGA 
CCACCGCCAC TGCCTCGGGA AGTAGGTGGC TCCCCTGCTT TCCCTCCTCT 
CCTCCGCCGT CGCCGAGGCA GCCAGCCAAG TCGTCCCAGC AGGTGGTAGG 
CTACTAGTCC GGGTGGCCGG CAGTGAGCAG GAGGAATCAT CTCTGGCGTT 
CTTGTCTCCG AGGAACTTTG ATTCTTTCTG GGAGGGGATT TGGTGTGCTG 
CTGCTGCTCC AGATGCTTCC CACCAGCAGG AACAGGCCCC AGCAGAGGCC 
TGCCAGATCT TGGTATTTCA TCTCAGACAT GGACTTCTCC GATCCGAAGC 
GCAAGCCGCG GTACCTCAGT AAGATCCTCA TGGTGGCGCT CCTCACCGCC 
ATGTGCGTCG TCATGCTCAC ACAGCCGCCC TGCCATAGGA GGACTCCCAG 
TGTGTTCTCC ATCCATGAAC CCGGAGTCAC GCATGTTCTA GTGACGGGCG 
GCGCTGGATA TATCGGTTCG CACGCTGCGC TTCGGCTGCT GAAAGATTCC 
TTCAGAGTCA CCATAGTAGA TAATCTTTCA AGAGGAAATA TGGGGGCAAT 
CAAGGTTCTT CAGAACTTGT TTTCAGAGCC TGGGCGGTTG CAGTTCATCT 
ATGCTGATTT AGGCGATCCA AAAGCTGTTA ATAGAATATT TGCAGAAAAT 
GCTTTTGATG CTGTCATGCA CTTTGCTGCT GTCGCTTATG TTGGTGAGAG 
CACACTTGAG CCTTTGAGGT ACTATCATAA CATCACCTCA AACACTTTAG 
TTGTGCTAGA GGCTATGGCA GCACACAATG TGAGAACCCT GATCTACTCT 
AGCACATGTG CCACCTATGG AGAACCCGAG AAGATGCCTA TCACCGAAGG 
AACTCCCCAG TTTCCGATCA ACCCATATGG TAAAGCCAAG AAGATGGCAG 
AGGACATCAT CTTGGATTTT TCCAAATCCA AGAAGGCAGA CATGGCTGTG 
ATGATTCTAA GATACTTCAA CGTCATTGGT TCTGACCCTG AAGGAAGGCT 
TGGCGAGGCT CCAAAACCTG AATTACGGGA GCATGGCCGT ATATCTGGTG 
CATGCTTTGA TGCTGCACTG GGGATAATTC CTGGTTTGAA GGTTAAAGGT 
ACTGACTATG AAACACCTGA CGGTACTTGT GTAAGAGATT ACATCGATGT 
CACTGACCTC GTTGACGCCC ATGTGAAGGC GCTCAACAAG GCGGAAAGGG 
GCAAAGTTGG CATATACAAT GTTGGCACAG GCAAAGGTAG GTCAGTGAAA 
GAATTTGTCG AAGCTTGCAA GAAGGCAACA GGAGTTGACA TCAAGGTCGA 
CTACTTCCCT CGTCGACCCG GTGACTATGC CGAAGTGTAC AGCGATCCCG 
CAAAGACCAA CAGCGAGCTG AACTGGACTG CTCAACATAC CGATCTCCTG 
GAGAGCCTCA GGGTTGCCTG GACATGGCAG AAGAAGCACC GGAGCGGCTA 
CGGACCCCCT CAGGCCATGG TTTTGTGAAG AGAATTTACC CTGTAGCATC 
TATTGGCTGA AAACTTAAAA ACTTAGGTGG ATATATTCTT AGGAATGTTC 
ATCATCAAGG GCTTTCAATT GCTCACTCAC AGAAGTTATA TGTAATATAG 
CGCTTATGGT CATTCGTTCA ATTCTTGAGA TTCATATTAT GGGAGGATTT 
TAGAAGATTG TAATATTGTT GATGTATTCA GTATACAATA AAAATCCAAC 
AAGCTATCCT C

Gene models with high sequence identity

AT1G30620.2 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 0; Score: 651.00

InterPro Scan Digest

Program	Description	E-value
superfamily	NAD(P)-binding domain	1.7e-89
Gene3D	NAD(P)-binding domain	6.4e-58
HMMTigr	UDP-glucose 4-epimerase	1.5e-142
HMMPanther	UDP-glucose 4-epimerase	1.3e-148
HMMPanther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	1.3e-148
HMMPfam	NAD-dependent epimerase/dehydratase	7.5e-49

See the detailed result >

AT1G30620.2

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary: encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.
Computational Description: MURUS 4 (MUR4); FUNCTIONS IN: UDP-arabinose 4-epimerase activity, catalytic activity; INVOLVED IN: plant-type cell wall biogenesis, arabinose biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G20460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR