K11332

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11332

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11332

Determination of introduced cDNA(s)

  • J023078D09 - Rice Full-length cDNAs - Original: J023078D09

    full reading [+] show sequence

    Nucleotide sequence: J023078D09 - full reading 
    TGTTCACGAG CTAGCGAGCG CGAGCATCGA GGCGCCATTC ATAATTCCAT 
    CTCCAGATAC TGATCAAGCA GATCAGAGCT CGAGTTATCA TAGCTATTTG 
    ATCAAATGGG AGGTGTCCAC GGTGTTTGCT ATGGCATGAA CGGCGACAAC 
    CTCCCGTCGC AGAGCGAGGT CGTGCAGCTG TACAAGTCCA ATGGCATCGG 
    TGCTATGCGC ATCTACAGCC CGGATCAGAA GGCCCTCGAC GCGCTCCGCG 
    GCAGCGGCAT CGCCGTCATC ATCGACGTCG GCGGCATCGG CGCGGTGGCC 
    AACCTCGCCA ACAACCCCTC CGCCGCCGCC GACTGGGTGC GTGACAACGT 
    CCAGGCCTAC TGGCCGAACG TCATCATCCG GTACATCGCC GTCGGCAACG 
    AGCTCGGCCC CGGCGACATG GGGACCATCC TCCCGGCCAT GCAGAACGTG 
    TACGACGCGC TCGTGTCCGC CGGCCTCTCG AACAGCATCA AGGTGTCGAC 
    GGCGGTGAGG ATGGACGCGA TCACCGACTC GTTCCCTCCG TCGCACGGCG 
    TGTTCCGCCC GGACCTGCAG CAGTTCATGG TGCCCATCGC GCAGTTCCTC 
    GCCAACACCA TGTCGCCGCT GCTCGCCAAC GTGTACCCCT ACTTTGCCTA 
    CAGGGACAAC CCGCGCGACA TCCCGCTCAA CTACGCCACG TTCCAGCCGG 
    GCACCACGGT GAGGGACAAC GACAGCGGCC TCACCTACAC CAACCTCTTC 
    AGCGCCATGG TGGACGCCGT GTACGCCGCG CTGGAGAAGG CCGGCGAGCC 
    CAGCGTCCGC GTCGTCGTGT CGGAGAGCGG GTGGCCGTCG GCGGGAGGGT 
    TCGCGGCGAA CGTGGAGAAC GCGAGGAATC ACAACCAGGG CGTGATCGAC 
    AACGTCAAGA ACGGGACGCC GAAGCGGCCC GGGCAGCTGG AGACGTACGT 
    GTTCGCCATG TTCAACGAGA ACCAGAAGCC CGGGGATGAG ACCGAGAGGC 
    ATTTTGGGCT CTTCTACCCT GACAAGACGC CGGTCTACCC GATTACGTTT 
    CCTCCGAACT AGCGGCTGAC CATGCCAGTG CAAATAAGGA TTTCCAGAGA 
    CGAATAATCC ATGATTAAAT AATGTTGGTT GAACGTTAAT GC

    Gene models with high sequence identity

    1. AT4G16260.1 [+] show detail - Glycosyl hydrolase superfamily protein
      E-value: 1e-81; Score: 300.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Glycoside hydrolase, family 17 0
    HMMPfam Glycoside hydrolase, family 17 1.3e-137
    Gene3D Glycoside hydrolase, subgroup, catalytic core 3.5e-122
    superfamily Glycoside hydrolase, catalytic core 1.8e-116

    See the detailed result >

    AT4G16260.1

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase superfamily protein
    Computational Description
    Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: defense response to fungus, incompatible interaction, response to salt stress; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 1 (TAIR:AT3G57270.1); Has 2169 Blast hits to 2154 proteins in 141 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 22; Plants - 2121; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR