K11333

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11333

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11333

Determination of introduced cDNA(s)

  • J023087K13 - Rice Full-length cDNAs - Original: J023087K13

    full reading [+] show sequence

    Nucleotide sequence: J023087K13 - full reading
    TTGACACACC GAGTCATCGC TCGCCGGAGT TAGAGTTCGT AGCGGCGAAG 
    GATATAGCCA TATATTATAG ATGGCGATTG GTGTTGGTGG CTGCTGCGCC
    GTGCTGCTCG CGGCGGCGCT GCTCTTCTCC TCTCCGGCCA CCACATATGC
    TTATGATTCC CTGGATCCAA ACGGCAACAT CACGATAAAA TGGGATGTGA
    TGCAATGGAC TCCTGATGGC TATGCTGCCG TTGTCACACT GTCCAACTAC
    CAGCAATTCC GGCACATCCA GCCACCGGGG TGGCAGCTGG GGTGGACATG
    GCAGCAGAAG GAGGTGATCT GGTCCATGTA CGGCGCGCAG GCCATCGAGC
    AGGGCGACTG CTCCATGTCC AAGGAGGGCA GCAATGTCCC CCACAGCTGC
    AAGAAGCATC CCACCGTCGT CGACCTCCTC CCGGGCGCCC CAATCGACCT
    GCAGATCGCC AACTGCTGCA AGGCTGGATC ACTGAGCGCA TTCAGCCAGG
    ACCCGGCAAA TTCTGCCGCG TCGTTTCAGA TCATTGTAGG CCATTCTGGG
    AACAGCAATG AGACTGTTAG GGTGCCGAAG AACTTCAGTC TTATGGCGCC
    TGGTCCGGGG TATACCTGTA GCCGTGCTAT GATTGTGAAG CCTAGTAGGT
    TTTTAAGTCC GGATGGGAGG AGGGCGACTC AAGTTCTGAT GACATGGAAT
    GTGATCTGCA CATACTCCCA ATTTCTTGCA CAAAAGGTTC CATCCTGCTG
    TGTTTCTCTC TCGTCGTTCG ACAATGACAA AACTGTTGAC TGCCCAACAT
    GCTCTTGTGG CTGCCGAAAT GAAAAATCTA CTACAGGAAA ATGTGTAAAG
    AAGAATGCAC CTGATTTGCA ATCCATCATT CACGGCCCTG GCAGATGGAC
    CTGGCAGCCT CTTCTCCAGT GCACTTCACA CATGTGCCCA GTGAAAATTA
    ACTGGCACTT GATGCTCAAA GACAAGGAAC ACTACAGAGT GAAAATCACT
    GTCACTAACT TGAACTACCG CATGAATTTC ACCGAATGGA ACCTGGTTGT
    TCAGTATCAT CCCATCCTCG ATATCACCCA GATATCTGGC TTCAATTACA
    AGTCAATCCA AGTCGGCAAA ATAAATGATA CTACGATGCT ATGGGGAGTA
    AAGCCCTACT ATGATTTGCT CATGCAAGCT GGTCCGCTTG GAAATGTGCA
    AGGAGAACTG ATTGTGAGAA AGGATTTCAG GGCTTCTTCC ACTACTAACA
    ATAACAAGGG AAGGGCCTTC CCAGTCCGTG TGTACTTCAA CGGTGATAAC
    TGTGTGATGC CGCCTCCGGA TGCATATCCA GTTAGTATTA CGGCTTAGAG
    GCGATCGTCA AGATGATTGT ATCGCATTAC TATATTTATG GGGTCATGAA
    TAAAGTGTAT TGTCTTGCCT ATTGAAGATT AGAAGTAACT ATAATTAAAT
    TGAATCTCCA ACTAGTATTA AGATTGTCAG AGGTCTGTTA TTTTGCTTGT
    AGATAAAATT CTGCCTATGT TAACTTCGAT GGTGTCAAAG ATATCAAATC
    CATAGCAGAT TCGTGGCAGG GGTC

    Gene models with high sequence identity

    1. AT5G60920.1 [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
      E-value: 1e-152; Score: 536.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR COBRA-like 6.7e-292
    HMMPfam Glycosyl-phosphatidyl inositol-anchored, plant 2.1e-70
    BlastProDom Glycosyl-phosphatidyl inositol-anchored, plant 3e-115

    See the detailed result >

    AT5G60920.1

    Model type
    Protein coding
    Short Description
    COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
    Curator Summary
    Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.
    Computational Description
    COBRA (COB); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR