K11348

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11348

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11348

Determination of introduced cDNA(s)

  • J013000H15 - Rice Full-length cDNAs - Original: J013000H15

    full reading [+] show sequence

    Nucleotide sequence: J013000H15 - full reading 
    GAGCGGCTGA TCTCTCTCAT CAATCTCCTC CGTCGCGGTC GCAGCTGCGG 
    GAGTGAAGCC GCCCCGCGGA GCTAGCTAAA CCCTAGCCAC TGCCCGGGCG 
    GAGAGTTGGG GTTTGGGTTG GTGGCGGTGG GCCGGTGGCG GCTCGGTGGC 
    GGAGCTCCGG TGTGGGGTGG TGTGGAATGG AATGGAAGTT ATTCGATGAT 
    TTCCCAGGAT TTTGACTAGG CCACAGATGG TTACAAGTTG CATTCATGGT 
    CAAAATTGTG TCTGAACATA GAGATTCTTT GGAGTTCATA GACGAAGTGA 
    TTTGTTTTGT TCAATACTTC CACACTTATA ATGGGTGCTG TCTGCTCAAG 
    GAAGAGAAGC CAATTAGTGC ACGAGGATGA CTCTTTCCAG ACATCTTCCA 
    GGTTCTCAAA GACCAGCAGC TTGAAATGGC TGCTGCTTAC ACTGCCACGC 
    AGCAATTCCG ATGTCTCCCG CAAGGGCCAG GGAAAGGGCC CTGGTCGTTG 
    CCCATCTCTA ATGGAGCTTT GTGTGGCCAA AGCCTGCGAG GATATTAACA 
    AGTATTCTAG TTTTTCTGTA TTGCCGAGGG ATCTCAGCCA GCAGATTTTT 
    AATGAATTGG TAGCGTCGAA CCGTCTCACG GAGACATTGC TTGAAACTTT 
    TCGGGATTGT GCACTACAGG ACATTGATTT GGGGGAGTAT CCTGGAGTGA 
    ATGATGCTTG GATGGAAGTA GTGGCTTCTC AAAGGCATTC ATTGTTATCA 
    GTTGACATTT CTTGCTCTGA AATAACTGAT AGTGGGTTAT ATCTTCTTAG 
    AGATTGTCCA AACATGCAAA GCTTGGCATG TAATTACTGT GATATGATCT 
    CAGAGCATGG CCTAGGAATC TTGTCAGGTC TTTCAAACCT GACATCTCTC 
    AGTTTCAAGA GCAGCGATGG TATTACTGCT GAAGCAATGG AAGCATTTGC 
    TAATTTAGTT AATTTGGTAA ATCTTGATCT CGAACGATGC CTAAAGATTC 
    ATGGTGGCCT TGTTCACTTA AAAGGCCTCA GGAATCTGGA GTCACTCAAT 
    ATGAGATATT GTAACAACAT TGCAGATTCA GATATCAAAT ACTTATCAGA 
    TCTCACAAAT TTGAAAGAAT TGCAATTGGC TTGTTGTAGA ATCACTGATC 
    TGGGTGTTTC TTATCTTAGA GGCTTGTCCA AGCTAACACA GTTGAATTTG 
    GAGGGCTGTC CAGTGACTGC TGCCTGTTTG GAAGCTATAT CAGGATTGGC 
    TTCTCTGGTG GTGTTGAATT TGAGTCGGTG TGGCATATAC GGTGAAGGCT 
    GTGAAAACTT TCAAGGTCTT AAAAAATTGA AGGTTTTAAA GCTTGGGGTT 
    CAATAATATC ACAGATGATT GTTTAGCACA TCTGAAAGAG TTGATCAATT 
    TGGAATCTCT AAACTTGGAC TCATGCAAGG TTGGAGATGA AGGCTTATTA 
    CATCTGAGAG GCCTTATGCT TTTGAAAAGT TTGGAGCTAT CTGACACCGA 
    AGTTGGAAGC AGTGGACTCC AGCATCTATC TGGCCTTCGG AATTTGGAAA 
    GCATCAATCT CTCGTTTACG TTAGTTACTG ATACCGGTAT GAAGAAGATA 
    TCTGCACTGA ATTCACTGAA GTCAGTTAAT CTTGACAATC GGCAGATTAC 
    TGATGTTGGC TTAGCAGCAC TTACAAGTCT CACTGGGTTG ACTCATCTGG 
    ACCTTTTTGG TGCTAGGATA ACGGACTATG GCACAAGCTG CTTCAGATTT 
    TTTAAGAATC TTGAATCTCT TGAAGTCTGC GGTGGGTTAA TTACTGATGC 
    TGGAGTGAAG AATATCAAGG ATCTCAAAGC TCTGAAGCAA CTCAATCTTT 
    CTCAGAACGT TAACCTGACA GACAAAACCC TGGAGCTGAT TTCTGGCTTA 
    ACTGCTTTAG TCTCGCTGAA CGTCTCCAAC ACTCGTGTAT CCAATGCCGG 
    CCTCCGCCAC CTGAAGGATC TGCAGAACCT GCGCTCGCTG TCGCTTGATT 
    CCTGCAGGGT CACGACAAGT GAGGTGAAGA AGCTGCAGGC GACGGTGCTC 
    CCCAACCTGA TAAGCGTTCG ACCCGAGTAG CTGGACACTA CATGATCACC 
    TGTAAATAAT CATCTGGATG GCTTCATGTA GATAGCTTTG CAAGGGCCTG 
    GATTGAAGCC AGATTAATAA GTAAAGTCTA TGGTAGCATT TGTTGGCCTA 
    AAACCGGGAG ACGTTGGCCC AACCGGGAGA AAGCCTTTCT ACACCCCAAA 
    AGCTAGCTCA TGAGGTGAGG GACCCCTCCC CTTTTAAGTT GGTGCCACTC 
    CCCCTAAACT TTCAATGTGG GACTATTCTC AACAGCATTT ACTAGGTCCT 
    TCCTGCTCCG TTTATCGGGA TCTTTTCGTT TTCAAGTACT GAAAAAATTA 
    CTTGTATTTC CTTCACTCCG TGTACCCTCC AAGGCGTGAC GGGAAGGAAC 
    AAAATTGTAA ATATTGCGCT TCCTCGCCAT TGTGGGATGC TTATGTGTAG 
    TGTGGTGTAC AGTGCCGCAT TTTCTGTGGC AGTTTGTG

    Gene models with high sequence identity

    1. AT1G15740.1 [+] show detail - Leucine-rich repeat family protein
      E-value: 0; Score: 305.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 5.7e-22
    Gene3D no description 8.4e-05
    Gene3D no description 3.2e-22
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 650
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 19
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 4
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 73
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 72
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 110
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 240
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 10
    superfamily RNI-like 3.9e-38
    superfamily RNI-like 1.5e-39
    HMMPanther F-BOX/LRR PROTEIN-RELATED 2 3.6e-86
    HMMPanther F-BOX/LEUCINE RICH REPEAT PROTEIN 3.6e-86
    HMMPanther F-BOX/LRR PROTEIN-RELATED 2 7.2e-53
    HMMPanther F-BOX/LEUCINE RICH REPEAT PROTEIN 7.2e-53

    See the detailed result >

    AT1G15740.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat family protein
    Computational Description
    Leucine-rich repeat family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G23840.1); Has 38052 Blast hits to 19856 proteins in 856 species: Archae - 6; Bacteria - 8624; Metazoa - 11681; Fungi - 680; Plants - 12072; Viruses - 79; Other Eukaryotes - 4910 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR