K11349

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11349

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11349

Determination of introduced cDNA(s)

  • J023090K18 - Rice Full-length cDNAs - Original: J023090K18

    full reading [+] show sequence

    Nucleotide sequence: J023090K18 - full reading 
    GAGGAATTAA AAGCAAAAAA AAAAGGAAAA TAAAGGAGAA AAGAGTGGCG 
    GCCATGGCGG CGGCGGCGGC GGCGGCGGTG GAGAGCGTGG TGGTGGTGCA 
    CAACGTGGCG AAGCGGCACA ACGTGGGGAC GCTGGCGCGG AGCGCGACGG 
    CGTTCGGGGT GGCGGAGGTG GTGGTCGTCG GCCGCCGCGA CGTCAGCGCC 
    TTCGGCAGCC ACGGCGCCAC CTCCCACCTC CGCTTCCGCC ACTTCGCCTC 
    CCTCCCCCTC GCCCGCGCCT ACCTCAAGGA CGAGAGGGGG TGTGACATTT 
    GCGGCGTGGA GATCACCCAC AACGCGCTGC CGGTGACGGC CCATCCGTTC 
    CGCCGGAGCA CCGCCTTCCT CTTCGGCAAT GAGGGTACAG GACTCTCGCA 
    GAAGGAGTGC GAGATCTGCG ACTTTTTTGT CTACATCCCT CAGTATGGTG 
    GTGGAACCGC ATCATTGAAT GTTACAGTTG CAGCGTCGAT TGTTCTTCAT 
    CACTTTGGAG TCTGGGCTGG CTTTCCAGAA CGAGGGCGAG AAGGTAATAA 
    ATTCGTTGTA GCTGATAAAC CAAAGGGCCA ATCTAGGGGA CTCTACTGTA 
    CAGACTCAAT TGAAGAAGTG ATTGAAGAAC GGAAGATGCG AAGAGAAAAT 
    GCCTGTGACA TATTTGAGGA AAATGGAAGT AGCGAGCATC AGGAATCAAA 
    TGTTTTAGGC ACGATGCTGT CAGACTAGAG TATCCCATCT CTTCTTTGCT 
    TACCAATCCA GTCTCTGCAT TGGTTGAGGG ATGAAACTAA TTTGCAATAC 
    CACATACAGC ACAATATCCA GCACTGGTTT CTCTTTTCCA GGGTGGCACA 
    AATATATGTA GAGTAAATTT CAGAGAACTC CATTTTTATG GTCAAAGTTG 
    CAGTTTCGCG ACTCGGTAAG GAGCATAATA GCACCCTTTC AAACCAAATT 
    CTTGTGGCAA TGATTAAGAG AATACCTTC

    Gene models with high sequence identity

    1. AT4G15520.1 [+] show detail - tRNA/rRNA methyltransferase (SpoU) family protein
      E-value: 2e-67; Score: 253.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RRNA METHYLASE 6e-60
    HMMPanther RNA METHYLTRANSFERASE 6e-60
    HMMPfam tRNA/rRNA methyltransferase, SpoU 3.1e-28
    Gene3D no description 3e-28
    superfamily alpha/beta knot 1.8e-31

    See the detailed result >

    AT4G15520.1

    Model type
    Protein coding
    Short Description
    tRNA/rRNA methyltransferase (SpoU) family protein
    Computational Description
    tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 7549 Blast hits to 7548 proteins in 2062 species: Archae - 19; Bacteria - 6000; Metazoa - 86; Fungi - 2; Plants - 92; Viruses - 0; Other Eukaryotes - 1350 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR