K11407

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11407

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11407

Determination of introduced cDNA(s)

  • J013164P20 - Rice Full-length cDNAs - Original: J013164P20

    full reading [+] show sequence

    Nucleotide sequence: J013164P20 - full reading 
    GTAAGTTTAT AATTGCTTTG AACTTAGATG ATGCTTGTTT TTCTTTCTTT 
    TGGTTTGTTT ACTTTTCATA AATTTGGATA AACAATCTAG TACTTACTGG 
    GAAATGATCT ACAAAGCATA TTGTTGCTCC CCCTGCTAAG CATCAACTTA 
    ACATAAGCTT TCTTCTCTGA CAATATTGTT AAATGCCTGA AATTGGATCA 
    CTCAGTAAGT AGGATTCTAG AATCAACCAT TCATTGCTCT TCACTATCCA 
    ATTTATTTTT GTTTCCCAAT TCATTTATGC ATTTTGGACT TAAGGTTGGT 
    TCCTACCATG CATCTTCTTT GTTTGTGGCC ACAAGACCAC CAACAGCTGG 
    GGTTGTTAGT AGGGGCATTG GTGTTGAAGG TGTCTCCACA GTCTTAGCTG 
    GCTTGTGGGG TACAGGAGTT GGATCTGCAA CAATAACAGA GAATGTACAC 
    ACAATTGCGG TTACTAAAAT GGGCAATCGA AGGGCGGTTG GATTTGGTGC 
    TATTGTACTT ATACTACTCT CTTTTGTTGG AAAAGTTGGT GCCTTCATTG 
    CTTCTATTCC TGATGTTCTA GTTGCTGCTC TTCTTTGTTT CATGTGGGCC 
    ATGCTATGTG CCCTTGGCTT ATCCAATCTT CGGTATAGCG CCAAGGGAAG 
    CTCCAGGAAC AGTATTGTAG TTGGGCTAGC TTTGTTTTTG TCCCTGTCAG 
    TTCCATCGTA CTTTCAACAG TACAGATTAC AGCCTAATTC AAACTCATCA 
    GTTCCAACCT ACTTCCAGCC ATACATTGTT GCATCTCATG GACCTATACA 
    CACTGGATCT AGTGGGGTAA ACTATATTCT CAACACGTTA CTGTCACTCA 
    ACATGGTCAT TGCGTTTTTG GTTGCCCTCA TACTTGACAA TACTGTCCCT 
    GGTGGTCGCC AAGAGCGGGG TTTGTATGTA TGGTCAGAGG CGGAGGCGGC 
    AAGGAGAGAA TCAGCTGTCA TGAAAGACTA TGAACTTCCT TTCAAGATTG 
    GACACGCATT CAGGTGGGTG AAATGCGTTG GCCTATAGCA CAGTTTTGGT 
    GTGGTTTGTA GCCTTGGCCA ACTGCACAAA AAATATTCTG CAGCTTCCAA 
    GAATGAAAAA TGGTTACTGT GCAAAATCTC AGGCGAAAGA AATGGTTAGT 
    CACGAATCAT GACCGACTGT TTCCCAATGT TTTTCAACCA AGGTATCGAC 
    TATCGAGTGT ACATACTGAA TTGCTCTCTA GGTTAGTTGT CTTGTCCTGA 
    TGCAGATGCT AGATGCATCA GGGGCTTCCC ACATTTTTTT GGACTACCTT 
    TTGTCATCAC TTACAGATTT TGCTCTTCTC CTGGTACTAT TTAATTGGTG 
    TTAGGGATAT CTATTTGTAC AGGCGGTAAA TGATCTGAAC C

    Gene models with high sequence identity

    1. AT2G27810.1 [+] show detail - nucleobase-ascorbate transporter 12
      E-value: 7e-98; Score: 354.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SODIUM-DEPENDENT VITAMIN C TRANSPORTER 1.5e-84
    HMMPanther Xanthine/uracil/vitamin C permease 1.5e-84
    HMMPfam Xanthine/uracil/vitamin C permease 6.8e-27

    See the detailed result >

    AT2G27810.1

    Model type
    Protein coding
    Short Description
    nucleobase-ascorbate transporter 12
    Computational Description
    nucleobase-ascorbate transporter 12 (NAT12); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil permease family protein (TAIR:AT4G38050.1); Has 9528 Blast hits to 9485 proteins in 1925 species: Archae - 69; Bacteria - 7579; Metazoa - 494; Fungi - 167; Plants - 469; Viruses - 16; Other Eukaryotes - 734 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR