K11408

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11408

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11408

Determination of introduced cDNA(s)

  • J013120O07 - Rice Full-length cDNAs - Original: J013120O07

    full reading [+] show sequence

    Nucleotide sequence: J013120O07 - full reading
    GGGCCGTCGC AAGGCCGCCG CATACTCTTC TCCCCTCTTT GACTCGTTTT 
    GCGCCCAAGT CGATCCCCAA CGTCTCCTCC TCGCTGGTTC GCCCGCCGCG
    CCGCGCCGAT CTCCATCCGT TCCACGAGCA GCGGTGACCG GGTGCTGTCG
    TCCTGCTCCC CGCTTCCCTT CCGGCTCCGA TTTGAGGCGC TAAAGTTTCC
    ATTCCGTGTT ACGAAAAGCT GCATTAGGAC ATGGACATGG CATTGCCAAT
    AGTGAATGCC ACCGCAGCGG TGCTTGCTCG TGTCTCAGCT GCATTCAATG
    CCCCTTTTGC CCGCGCAGTT GTCTTTGGGG TTCATATCGA TGGGCACCTG
    GTTGTTGAAG GGCTCCTTAT AGCGGTCATA GTGTTTCAGC TTTCTAGGAA
    GAGCTACAAA CCGCCCAAGA AGCCACTCAG TGAAAAGGAG ATTGACGAGC
    TATGTGATGA ATGGGAGCCA GAACCTCTGT GTCCTCCGAT CAAGGATGGG
    GCCCGAATTG ACACACCAAT GTTGGAAAGT GCTGCTGCTC CACATACAAC
    CATTGATGGG AAAGAAGTTA TAAACTTTGC ATCAGCAAAT TATCTTGGTT
    TGATTGGCAA TGAGAAGATT ATTGATTCTT GTGTTGGTTC ACTGGAGAAA
    TATGGTGTTG GTTCTTGTGG TCCACGTGGC TTTTATGGAA CAATTGATGT
    CCACCTTGAC TGTGAGGCAA AAATAGCGAA GTTTCTTGGA ACTCCAGACT
    CAATTCTGTA TTCATATGGG ATTTCTACAA TATTTAGTGT GATACCTGCC
    TTTTGTAAGA AAGGAGACAT CATAGTTGCT GATGAAGGTG TGCACTGGGC
    AGTGCAAAAT GGTCTTCATC TGTCAAGAAG CACTGTTGTT TATTTTAAAC
    ACAATGATAT GGCTTCACTT GCAAACACTT TGGAAAAACT TACACGTGGA
    AATAAACGAG CAGAAAAGAT CAGACGATAC ATTGTTGTAG AATCTATCTA
    CCAGAATTCT GGTCAAATTG CTCCCTTGGA TGAGATTGTC AGATTGAAGG
    AGAAATATCG ATTCCGTGTT ATTCTGGAGG AAAGCCATTC TTTTGGTGTG
    CTTGGCCAGT CTGGACGAGG CCTTGCTGAA CATTATGGAG TTCCAATTGA
    CAAAATTGAT ATTATCACTG CTGGAATGGG GAATGCATTA GCTACTGATG
    GTGGCTTTTG TACAGGAAGT GTTAGAGTTG TTGATCATCA GCGTCTAAGC
    AGTTCTGGCT ATGTTTTCTC GGCTTCTCTG CCACCTTATC TTGCCAGCGC
    TGCGGTTTCT GCTGTCAGCT ACCTGGAGGG GAACCCGTCA GTTCTTGCAG
    ACCTGAGGAG CAACATTTCT TTCCTGCATA AAGAACTGTC AGGTACTCCA
    GGACTTGAAA TTTCCAGCCA TGTTCTGTCA CCTATCGTTT TCCTCAAACT
    GAAGAAATCG ACGGGTTCAT CAAACACCGA TATAGATCTT CTTGAAACTA
    TTGCTGAGAG GGTATTGAAG GAAGATTCAG TTTTTATCGT GGCGTCAAAG
    CGGTCACCTT TGGATAGGTG CAAACTTCCC GTCGGAATAC GCCTCTTCAT
    GTCAGCCGGC CACACCGATT CAGACATCTC CAAAGTGTCC TCATCCTTGA
    AGCGGGTCTC AGCATCAGTT CTGTCAGATT ACATCTGATC CCCTTTCTCT
    ACGAGCTGTG CACTAATCTC TGTGTGCATG TTTGGTTAAT GTACATAACC
    TGTACATTTG TAGGTTCCGA TGATTCCCGT TGCCGCTCAT ACTTGCAAAC
    ACTTCGAAAA ATAGACGTAG AACAGTGAAA TTAGGTGTGT TATGTATCGT
    TCGGTCTTCT GGTAGTGGTT TCCCGGTAGA ATTCATTCTA TATCTTTAAT
    TTTGTCCTCT ATTCATCACT TTTATCATTT TGGCTTCAAT TCATCACTTT
    CTGGTGGATT TATATTCTTT TTTTTAGTGT AGATTGGTTG CGCAAATGGC
    GAAAAGACCC CAAATTCTCA AATCGGCACA AATCGTTTCC AGGTTTCATC
    TTACCCAATC GCTCCTTCCT TGCAAATCCA ACCTGAGCAG CCATATTAAC
    CAAACTGAAA GCGCTGCCTA TCGAACACCA CAGGCGGAGA CGATGGATTT
    GTGCCGGACA ACCGGAGCAC GTGCAACGCG TCCATGTTCA GCACAAAAAA
    ATATAACTAC TTCAAGCTAT TAGGACAATG TTATATCCAA ATACATAGAA
    AAAATATTGC TATATTTTGG AATGGAGATA GTACTTCCAT TCAAATCATG
    ATATATATAA ATATTAAATT TGAAAATGC

    Gene models with high sequence identity

    1. AT4G36480.2 [+] show detail - long-chain base1
      E-value: 6e-180; Score: 628.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SERINE PALMITOYLTRANSFERASE I 1.4e-226
    HMMPanther CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANO 1.4e-226
    HMMPfam Aminotransferase, class I/II 3e-40
    Coil coiled-coil 0
    superfamily Pyridoxal phosphate-dependent transferase, major domain 2.7e-70
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 3e-71

    See the detailed result >

    AT4G36480.2

    Model type
    Protein coding
    Short Description
    long-chain base1
    Curator Summary
    Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion.
    Computational Description
    long-chain base1 (LCB1); FUNCTIONS IN: protein binding, serine C-palmitoyltransferase activity; INVOLVED IN: cell growth, sphingolipid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: long chain base2 (TAIR:AT5G23670.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR