K11432

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11432

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11432

Determination of introduced cDNA(s)

  • J013131N20 - Rice Full-length cDNAs - Original: J013131N20

    full reading [+] show sequence

    Nucleotide sequence: J013131N20 - full reading 
    GCTCGATCTC TGCCTCCTCC CCCCACCGCC GGAGAAGGTC GCCGCCGGCG 
    AGCGAGCGCG CCCGCCGGAG TTGTAGCCGC CTCTCTCCCC CCCGCGGCAG 
    CCTGACGCCT TCACGCAGCG TGATCTCCTT CCCCCCCTAC CGCTGGCGGG 
    GATCCGTGCT CTGTCGGTCG GTTCAGTTGG TGGACTGGTG AACTGAAACT 
    TATTGCTTGG TGCTAGTGTG ATGGCGTACG AGATTAGCGA GATCAAAAAA 
    TTGGCATAGG CCTGGTGGGC TTTGGCATCC TATTCTCATT CTTTGGCGTT 
    ATCCTTTTCT TTGATAGGGG CTTGTTGGCG TTGGGTAATA TTTTCTTCTT 
    GACTGGAATC GGCTTGTTGC TTGGTTGGCA ATCTATGTGG CAGCTTTTCA 
    CAAAGAAGGC AAACATTAAG GGATCTGTTC CTTTCTTCCT TGGTCTGTTT 
    CTTCTCTTTG TCCGATGGCC TGTTGCTGGC ATAATAATGG AGCTATATGG 
    ATCTTTTGTT CTCTTCAGTG GTTATGGACC TCCTATCCAG GCCTTCCTAT 
    ACCAGATTCC AGTCATTGGA TGGATTCTGC AATACCCATT CCAGCTGTTT 
    GGTCAGTTCA GGCGTAAACG TGCATGACAA CTCACGGCAG AAATTACCCT 
    TCGTACGGGA GCATATTTTG TGATGTTAAT ACGGAAACCT GCTGTGTACC 
    ATCTGCCACG ATGCAGTTTA ATTCTTGTGT GCATATTCAT ACTTTCGCCT 
    TTCTAATCTG GAGTTTATCT GGCTTTTGCT CATTTTGCT

    Gene models with high sequence identity

    1. AT1G05785.2 [+] show detail - Got1/Sft2-like vescicle transport protein family
      E-value: 7e-19; Score: 91.30

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CGI-141-RELATED/LIPASE CONTAINING PROTEIN 2.5e-15
    HMMPfam Vesicle transport protein, Got1/SFT2-like 3.1e-14

    See the detailed result >

    AT1G05785.2

    Model type
    Protein coding
    Short Description
    Got1/Sft2-like vescicle transport protein family
    Computational Description
    Got1/Sft2-like vescicle transport protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Got1/SFT2-like (InterPro:IPR007305); BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G01430.2); Has 450 Blast hits to 450 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 111; Plants - 97; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR