K11445

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11445

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11445

Determination of introduced cDNA(s)

  • J023086O18 - Rice Full-length cDNAs - Original: J023086O18

    full reading [+] show sequence

    Nucleotide sequence: J023086O18 - full reading 
    GACCGACCTC GACCTAGCTA ATTAAGGCGC AACACAGAAA CCCTCACCGC 
    CGCCCGCATC CATGGCGGAG GAGCACGAGA CGAGGCCGCC GTCCGCCGGA 
    AGGCCGCCGT CGTCCGGCCG CGGCAGGGCC GACGACGCTG ACGAGAGGGA 
    GGAGGGGGAG ATCGCCGACG ACGACTCCGG CCACGCGCCG CCGCAGGCCA 
    ACCCCGCCGC GCCGCACCCG CTCGAGCACG CCTGGACCTT CTGGTTCGAC 
    AACCCGCAGG GAAAGTCCAA GCAGGCAACC TGGGGAAGCT CCATCCGCCC 
    CATCCACACC TTCTCCACCG TCGAGGACTT CTGGAGCCTT TATAACAATA 
    TCCATCACCC AAGCAAGTTG GTTGTGGGAG CTGACTTCCA TTGCTTTAAG 
    AATAAAATCG AGCCAAAATG GGAAGATCCT ATCTGTGCTA ATGGAGGTAA 
    ATGGACCTTC AGCTGTGGCA GAGGAAAGTC CGACACAATG TGGTTGCATA 
    CTTTATTGGC AATGATTGGC GAACAATTCG ATTATGGGGA TGAAATTTGT 
    GGAGCAGTTG TTAGTGTGCG TGGCAAGCAG GAAAGAATAG CTATCTGGAC 
    TAAAAATGCT GCCAATGAAG CTGCTCAGAT AAGCATTGGG AAGCAGTGGA 
    AAGAATTTCT GGATTACAAG GACTCGATTG GGTTCATTGT TCATGACGAT 
    GCAAAAAAGA TGGACAAAGG TCTCAAGAAC CGCTACACAG TTTGATCTGA 
    GCACTCCTGT CCAGATATCC AAGAGAGTAG TATATCCACA TGTAGGATGG 
    GTTTTCTTCG ATGCTTTAGT GTTTGTCATT CGCTTGTAGC GAGCGCTTGA 
    AGGCTATAAT ATTGCCGTGA ACTGTTTAAA CTTGAAACGT AATATAATGA 
    CGTATCAGAG GTGTCTCTGT ACTCT

    Gene models with high sequence identity

    1. AT4G18040.1 [+] show detail - eukaryotic translation initiation factor 4E
      E-value: 7e-82; Score: 300.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Eukaryotic translation initiation factor 4E (eIF-4E) 4e-83
    HMMPfam Eukaryotic translation initiation factor 4E (eIF-4E) 2.1e-57
    PatternScan Eukaryotic translation initiation factor 4E (eIF-4E), conserved site 0
    Gene3D Eukaryotic translation initiation factor 4E (eIF-4E) 3.2e-72
    superfamily Eukaryotic translation initiation factor 4E (eIF-4E) 1.5e-71

    See the detailed result >

    AT4G18040.1

    Model type
    Protein coding
    Short Description
    eukaryotic translation initiation factor 4E
    Curator Summary
    eIF4E protein. The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein.
    Computational Description
    eukaryotic translation initiation factor 4E (EIF4E); CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 4E (eIF-4E) (InterPro:IPR001040), Eukaryotic translation initiation factor 4E (eIF-4E), conserved site (InterPro:IPR019770); BEST Arabidopsis thaliana protein match is: Eukaryotic initiation factor 4E protein (TAIR:AT1G29550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR