K11508

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11508

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11508

Determination of introduced cDNA(s)

  • J013157C18 - Rice Full-length cDNAs - Original: J013157C18

    full reading [+] show sequence

    Nucleotide sequence: J013157C18 - full reading 
    GGCCGCAGCA AAAGCTTCCC TTCCCCCATC TCCCTCTCCT CTCCTCTCCT 
    CCCCGCCTCC CCCCGCCTCG ATACCCTGCA AGCCCTAGCT CTCTCTCGCC 
    GCCAATGGAG TCGCAGGTGC TGGTGGCGCT CGCCCTCTCG CTCGTCGGCG 
    GCCTCAGCAC GTCCATCGGT GCGCTGTTTG TGATTTTGAA TCCGACGCCT 
    AATCTTAAGA TGCTTGGGCT TCTACAGGGT TTTGCCGCTG GACTTATGTT 
    GAGCATTTCC TTTCTAGATT TGGCACACAA TGCATTGAAT TCTATTGGTT 
    TCTTGAAGGG CAACCTTTGG TTTTTTGCTG GAGTTCTTTT CTTTGGTTTG 
    GTTGTCAAGT TTATTCCAGA GCCAACTGTT GTGCCAACAG CTGATGCAGG 
    CAAGAAGCAG ACTGACGATG ATGGTTCGGG TAAAGATATG ATGAAAAAAC 
    ATCGTCGGCA AGTATTATTC AGTGGGATCA TTACTGCTGT TGGAATCAGC 
    TTGCATAACT TTCCGGAGGG GATGGAAGTA TTTTTGGGAT CCATGAAGGG 
    CCTTCGTGTG GGACTGAACT TGGCTATTGC TATTGCTTTA CACAATATAC 
    CAGAGGGGGT TGCTGTAGCT CTACCACTCT ATTTTGCTAC CAACAGCAAA 
    TGGCAAGCAT TTAAAGTTGC AACCCTCTCT GGTTTCGCTG AGCCACTAGG 
    AATGATCATT GTTGCTTACT TGTTTCCGAG CAGCTTAAAT CCTGAAGTTC 
    TTGAAGGCCT ACTTGGTTCA GTTGGTGGGG TTATGGCCTT CCTCACTTTG 
    CATGAAATGT TACCTCTAGC ATTTGACTAT GCTGGTCAAA AACAGGCTGT 
    CAAAGCAGTC TTTGTTGGCA TGGCCTTCAT GTCTGCAAGC TTGTATTTCT 
    TGGAGATCAG CCTGCCAAAG GAAGTGAGCT TGTAGCACAT GACTATCCAT 
    ACAAGCTTGT CACACTATCC TCTGAACTGA AGCGGAGAAC TTAGGAGAGA 
    TGTTAACTTT CTGAGCACTG CCAGGCAGGG ATGTGGGGAT ATATGGTTCG 
    CCATTTATCA AACGGAAACA AGGATTTGTG ACTTAGATTC GCGCGTTGGC 
    CATGTGTATG CTATCACAGC TGGTCATTGT ATTTGACCAT TTTACAGTGA 
    AGATGAACAG TCTGGGATGG GTGGCAAAAC ACCACCCAGA ATCAGAATGT 
    AACCTCCGCT TGTTGGGGAG GAATAGGACA CAACTTGAAC TAGCAGACTG 
    ATCAGATCAG TCCTTTAACT TGACCAGTGT ACATTGGTTG AAGGCACTGT 
    GAGAAAAATA AAAATAAAAA TGCTTCGTTT TC

    Gene models with high sequence identity

    1. AT3G20870.1 [+] show detail - ZIP metal ion transporter family
      E-value: 9e-95; Score: 344.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SOLUTE CARRIER FAMILY 39 (METAL ION TRANSPORT 3.4e-53
    HMMPfam Zinc/iron permease 2.7e-21

    See the detailed result >

    AT3G20870.1

    Model type
    Protein coding
    Short Description
    ZIP metal ion transporter family
    Computational Description
    ZIP metal ion transporter family; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport, transmembrane transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP metal ion transporter family (TAIR:AT3G08650.2); Has 3662 Blast hits to 3630 proteins in 1201 species: Archae - 124; Bacteria - 2163; Metazoa - 678; Fungi - 116; Plants - 147; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR