K11610

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11610

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11610

Determination of introduced cDNA(s)

  • J013075J07 - Rice Full-length cDNAs - Original: J013075J07

    full reading [+] show sequence

    Nucleotide sequence: J013075J07 - full reading
    GACTTGTAAG AGTCATACAC GATTGCGCAT GGAGCTGGAC AAGAAATTTA 
    AGGTGCTTTG CCTGCACGGC TTCCGGACAA GTGGGAGTTT TCTGAAGAAG
    CAAATCAGCA AATGGAATCC TTCCATCTTC CAACAATTTG ACATGGTCTT
    CCCTGATGGC ATATTCCCAG CTGGAGGGAA ATCAGAGATA GAAGGCATAT
    TTCCCCCACC CTACTTTGAG TGGTTTCAGT TCAACAAGGA CTTCACTGAA
    TACACAAATC TGGATGAGTG CATTTCATAC CTGTGTGATT ACATGGTGAA
    AAATGGACCT TTTGATGGCC TGCTTGGATT CTCCCAGGGT GCAACTCTTT
    CTGCTCTTTT GATAGGTTAC CAAGCACAGG GCAAAGTACT GAATGATCAT
    CCACCAATCA AGTTCATGGT CTCAATAGCT GGGAGCAAGT TCAGGGACCC
    AAGCATATGC AATGTAGCCT ATAAGGATCC GATCAAGGTG AAATCAGTGC
    ATTTCATTGG AGAGAAGGAT TGGCTCAAAG TGCCTTCCGA GGAGCTGGCC
    GCTGCCTTTG AGGACCCTGT CATCATAAGA CATCCCCAGG GCCACACTGT
    CCCTAGGCTT GATGAGGCAA GTGTGAAGCA GCTTTCTGAG TGGAGCTCAA
    GCATCCTGGA AGACATCAAG AATGCAGATG ATGTTGCCAA GGCTTCAATT
    GTGGAGAAGC CATCTGAGGG TAATACCGTG GCAGAGTCCG GTGAAAACCT
    GGTGGAGCAA ATTGCAGCTT GAGTATGGTA ACTGACAGTC TTGACACTGT
    CTGGAGGCTG GAGCTGATTG CTGCTTCAAA TTAAACCGGA TTAGTCCGTC
    ATGAAACTCG ATCTATCCAA ATGTTTAAGT CTTTAAGAGC TTTCTTTTTT
    AGCGAAGATG TTTAAAAACT TTGTTACCAC AAATATATTT GCCTGGGTAC
    TGCTTGTATT CTCTGGGGGA ACTAATTGAA TCGACTCATA ACCGGACCAA
    ATGGATTCAG GGATTCATC

    Gene models with high sequence identity

    1. AT4G24380.1 [+] show detail - INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthet...
      E-value: 1e-60; Score: 230.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther OVARIAN CANCER GENE-2 PROTEIN-RELATED 1.1e-47
    superfamily alpha/beta-Hydrolases 2.1e-06
    HMMPfam Serine hydrolase 9.6e-52

    See the detailed result >

    AT4G24380.1

    Model type
    Protein coding
    Computational Description
    INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR