K11610

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11610

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11610

Determination of introduced cDNA(s)

  • J013075J07 - Rice Full-length cDNAs - Original: J013075J07

    full reading [+] show sequence

    Nucleotide sequence: J013075J07 - full reading 
    GACTTGTAAG AGTCATACAC GATTGCGCAT GGAGCTGGAC AAGAAATTTA 
    AGGTGCTTTG CCTGCACGGC TTCCGGACAA GTGGGAGTTT TCTGAAGAAG 
    CAAATCAGCA AATGGAATCC TTCCATCTTC CAACAATTTG ACATGGTCTT 
    CCCTGATGGC ATATTCCCAG CTGGAGGGAA ATCAGAGATA GAAGGCATAT 
    TTCCCCCACC CTACTTTGAG TGGTTTCAGT TCAACAAGGA CTTCACTGAA 
    TACACAAATC TGGATGAGTG CATTTCATAC CTGTGTGATT ACATGGTGAA 
    AAATGGACCT TTTGATGGCC TGCTTGGATT CTCCCAGGGT GCAACTCTTT 
    CTGCTCTTTT GATAGGTTAC CAAGCACAGG GCAAAGTACT GAATGATCAT 
    CCACCAATCA AGTTCATGGT CTCAATAGCT GGGAGCAAGT TCAGGGACCC 
    AAGCATATGC AATGTAGCCT ATAAGGATCC GATCAAGGTG AAATCAGTGC 
    ATTTCATTGG AGAGAAGGAT TGGCTCAAAG TGCCTTCCGA GGAGCTGGCC 
    GCTGCCTTTG AGGACCCTGT CATCATAAGA CATCCCCAGG GCCACACTGT 
    CCCTAGGCTT GATGAGGCAA GTGTGAAGCA GCTTTCTGAG TGGAGCTCAA 
    GCATCCTGGA AGACATCAAG AATGCAGATG ATGTTGCCAA GGCTTCAATT 
    GTGGAGAAGC CATCTGAGGG TAATACCGTG GCAGAGTCCG GTGAAAACCT 
    GGTGGAGCAA ATTGCAGCTT GAGTATGGTA ACTGACAGTC TTGACACTGT 
    CTGGAGGCTG GAGCTGATTG CTGCTTCAAA TTAAACCGGA TTAGTCCGTC 
    ATGAAACTCG ATCTATCCAA ATGTTTAAGT CTTTAAGAGC TTTCTTTTTT 
    AGCGAAGATG TTTAAAAACT TTGTTACCAC AAATATATTT GCCTGGGTAC 
    TGCTTGTATT CTCTGGGGGA ACTAATTGAA TCGACTCATA ACCGGACCAA 
    ATGGATTCAG GGATTCATC

    Gene models with high sequence identity

    1. AT4G24380.1 [+] show detail - INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthet...
      E-value: 1e-60; Score: 230.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther OVARIAN CANCER GENE-2 PROTEIN-RELATED 1.1e-47
    superfamily alpha/beta-Hydrolases 0.0000021
    HMMPfam Serine hydrolase 9.6e-52

    See the detailed result >

    AT4G24380.1

    Model type
    Protein coding
    Computational Description
    INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR