K11614

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11614

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11614

Determination of introduced cDNA(s)

  • J023051L23 - Rice Full-length cDNAs - Original: J023051L23

    full reading [+] show sequence

    Nucleotide sequence: J023051L23 - full reading 
    GGGCATAAGC AAAGGTTTGT GTGTGTCAGA GTCACTAGGC CTAGCTAGCT 
    CCATCAGTTT TGGCTCTGGG ATGGTGCTGG GGCAGCTTGC ACTGTGGTCC 
    AAGATTGCCA ATGAAGCATC CTGTGGGTCA CCAAGATGGA TAGGGAAGAG 
    CCTCTCTTGC GTATGCATCA AGAGAAAAGG AGCCTATGAG AGAATATGCA 
    TGAACCTTAC ACCAGTGCAG GAAGAGAGGC TTCAGAGGCT GAGGCACCGT 
    ATGAAGGTTT ATTTTGATCC TTCTAGACGA GATCATCAGG AAGCATTGAA 
    AGCTCTTTGG CATGCAACAT ATCCTGACCA AGAACTACAA GGTTTGATTT 
    CTGAACAGTG GAAGGACATG GGATGGCAAG GAAGAGACCC ATCAACTGAC 
    TTCAGAGGCG CAGGATTCAT ATCTCTGGAG AATCTTCTAT TCTTCGCGAA 
    GACATTCTCT GCCTCATTTC AGAGGCTGCT AAAGAAACAA TGTGGCAATC 
    GAGCTACTTG GGAGTACCCA TTTGCAGTTG CTGGTGTAAA TATCACATTC 
    ATGATCATGC AGATGCTGGA TCTCCAATCT ACTAAGCCAA GAACGTTTGT 
    TCGAGCTGTT TTTATCCAAA TGCTGTCAGA GGATGAGTGG GCATTTGATC 
    TCCTCTACTG CGTCGCGTTC GTTGTTATGG ACAAGCAGTG GCTCGACAAG 
    AACGCCTCCT ACATGGACTT CAATGAGATA CTGAAGTCGA CACGGACACA 
    GCTGGAGAGG GAGCTTCTGC TGGATGATGT GATGCGGATC GAAGACATGC 
    CGTCATACAG CCTGCTCTGC TAGTAGTGGC CATACTGGTT GAACAATCAT 
    GATTGAGTCA ATGGTTCTGA CCTCTGAGTG TATAGCCCCC TCCCTTTTGT 
    TGATTCCAGG GAAGGGAATT TTTGATGGCA TGTAGAGCAA TGGCCTCCTA 
    TTGTCATGCT GAACTTGTCC CACTGTAAAC AACTCATCTG GGCATCACCA 
    CAATGAATTA GAATTGCTAG CATCCAATGT CAAAGCTGGT GTTAATCTGT 
    CATATTTTAC CCCATGGATG TAACAACAGA ATCAACGAGT GGGTAAAATC 
    AACTTGCAAC CTCTGGTGAA TGGTGTTC

    Gene models with high sequence identity

    1. AT1G67400.1 [+] show detail - ELMO/CED-12 family protein
      E-value: 3e-108; Score: 389.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan DNA methylase, C-5 cytosine-specific, active site 0
    HMMPanther CELL MOTILITY PROTEIN RELATED 2.2e-143
    HMMPanther ENGULFMENT AND CELL MOTILITY 2.2e-143
    ProfileScan Engulfment/cell motility, ELMO 29.967
    HMMPfam Engulfment/cell motility, ELMO 1.9e-53

    See the detailed result >

    AT1G67400.1

    Model type
    Protein coding
    Short Description
    ELMO/CED-12 family protein
    Computational Description
    ELMO/CED-12 family protein; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; CONTAINS InterPro DOMAIN/s: Engulfment/cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT2G44770.1); Has 873 Blast hits to 873 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 490; Fungi - 72; Plants - 180; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR