K12203

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12203

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K12203

Determination of introduced cDNA(s)

  • J013029J19 - Rice Full-length cDNAs - Original: J013029J19

    full reading [+] show sequence

    Nucleotide sequence: J013029J19 - full reading
    GTAGTGAAGG GGCTCATCAG CACTGGACGA TTGGAATTAA TAAACGGGGG 
    AATGTGCATG CATGATGAAG CGACCGTGCA CTACATTGAC ATGATAGACC
    AGACTACGCT CGGGCACAGG TTCATCAAGG AGGAGTTTGG TCAGATTCCA
    AGGATTGGTT GGCAGATTGA TCCGTTTGGG CACTCCGCAG TTCAGGCTTA
    CCTCCTAGGC ACAGAAGTAG GATTCGATGC TTTTTATTTT TTCCGGATTG
    ATTACCAAGA CCGTGACACA CGGAAGGGAA CAAAAGAGCT CGAGGTTGTG
    TGGAGGGGCT CCAAGACCTT CGGCTCATCA GCTGACATCT TTGCTGGCAT
    CTTCCCAAAA AATTATGAAC CACCTCCTGG TCAGTTTTAC TTCGAAGTTG
    ATGATACTTC CCCAATCGTC CAGGATGATC CCCTTCTTTT TGATTATAAT
    GTGGAGCAAC GGGTGGATGA CTTTGTTGCT GCAGCTATAG CACAGGCAAA
    TATTACAAGG ACAAATCACG TTATGTTTAC AATGGGCACA GACTTCAAAT
    ATCAATATGC AGAAAGTTGG TTCAGACAGA TGGACAAATT AATTCACTAC
    GTTAATAAGG ATGGCCGTGT CAATGCTCTG TATTCCACAC CTTCGATTTA
    TACTGATGCA AAACATGCTG AAAATGTGCC ATGGCCTCTC AAGACTAATG
    ATTTTTTCCC GTATGCAGAC AACCCAAATG CATATTGGAC AGGTTACTTC
    ACAAGCAGAC CTGCCTTAAA ACGATACGTT CGTGTTATGA GTGGATATTA
    CTTGGCAGCT AGGCAGTTGG AATTCTTTAA AGGGAGAAGC AACTCTGATC
    TCACAACAGA TAGTTTAGCT GATGCTCTAG CTCTTGCTCA GCACCATGAT
    GCTGTTACAG GAACGGAGAA GCAACATGTC GCAAATGACT ATGCAAAGAG
    ATTATCAATT GGCTATACAC AAGCCGAGAA GCTGGTTTCA TCCTCTCTCT
    CTTGCTTGAG CCAGTCAGGC TCAAAATCAC ATTGTCCGTC CCAAACAACG
    AATTTTGAAC AGTGTCCGCT CCTAAATATT ACATATTGCC CCCCTTCCGA
    GATGGACCTT TCTCAAGGGA AAAGTTTGGT TGTGCTTGTG TACAACTCTC
    TTGGGTGGAA ACGGGAGGAT GTCCTTCGCA TACCGGTCAT CAGTGACTCA
    ATTGTTGTTC ATGATTCTGA GGGAAGAGAA GTTGAATCAC AACTTCTGCC
    TATAGCTAAT GCATCTTTGT ACATGCGGGA GAAACATGTC AAGGCTTACC
    TAGGCATGTT ACCAGCTGCA AAACCCAAGT TTTGGCTTGC TTTTCCAGTT
    TCTGTACCAC CTCTTGGTTT CAATACGTAC TTTATATCAA GCGGGAAGAA
    ATCAGCATCA GTCTCTTTGA TGTCCACTCT GCACTCATCT CAAGGAAGTG
    AAAATAGTAA CATGCAAATT GGGCAAGGAC AGTTGAAACT TCAAACAATG
    CAGCTGGAGC ATTATCTCTG TACTCCAATA GTAAGACCCA GGTTGAAGCA
    AATTTTGAGC AGAAGTACAA GTATTACATA GGACAGGATG GAAATGGAAG
    TGATCCTCAG GCTTCTGGAG CATACATATT TCGCCCTAAT GGCACAGTTC
    CTATCAAGAC TGATGGACAG GTTCCTCTGA CAGTTCTCCG TGGGTCCATA
    TTGGACGAAG TGCATCAGCA GATTAATCCA TGGATATATC AGATCAACAG
    AGTTTACAAA GGAAAGGACT ATGTGGAGAC TGAATTTATA GTTGGACCAA
    TACCAGTGGA TGATGGAAAT GGAAAAGAAC TATCCACTGA AGTCGTTACA
    AACATGGCAA CAAACAAAAC ATTTTACACT GATTCCAGTG GACGTGACTT
    CATCAAAAGG ATACGGGATT ACCGGTCAGA GTGGAAGATC GAAGTGCACC
    AGCCTATCGC TGGAAACTAT TATCCTGTTA ATCTTGGCAT TTATGTGGAA
    GATGGAAGCA GAGAGTTATC TATACTTGTA GACAGGTCTG TTGGAGGTGC
    CAGCATAAAG GATGGACAGA TAGAGCTAAT GCTACACAGG AGACTACTTC
    ATGATGATGG TCGTGGTGTT GCAGAGGCAT TAAATGAAAC AACCTGTTTT
    GATAATCAAT GTGAAGGACT AGTTATTCAA GGAAAGTATT ATCTCAAAAT
    TGATCCACAA GGTGAAGGAG CTAGGTGGCG GCGGACATTT GGCCAGGAAA
    TATACTCCCC TCTTCTTATT GCTTTTGCAG AGCAGGATGG AGGTAATTGG
    GTGAATTCAC ACGTTACAAA ATTCTCTGCA ATGGATCCGG CCTACAGCTT
    GCCTGATAAT GTTGCATTGC TTACTCTTCA GGAACTTGAA GACGGAACTG
    TTCTTCTTCG GTTGGCTCAC CTATACGAGG CTGGAGAGCA CAAGGATCTT
    TCAGCTCTAG CTAGCGTCGA CCTGAAGAGA GTATTTCCAG ACAAGAAGAT
    TGTCAAGATT GTTGAGACAA GCCTATCAGC GAACCAAGAA CGTTCAGCCA
    TGGAGAAAAA GAGGCTGAAG TGGAAGGTGG AAGGCCCTCC TGCTGATGAA
    AAGATCGTCC GGGGAGGCCC CGTAGATCCT TCCAAGCTCG TCGTTGATCT
    GGGCCCCATG GAGATACGCA CATTCCTCAT CAATTTCGCC CCGCAGTCCG
    GCAAACAGTT GATGTGAGGG GTGACATGGC CTTGGCACCA ATGTTTTATT
    TTTAGCTTGA GTTCTTCTCA TGGTGATGAG CAATAAGAAA TAATGTGGCC
    ATGGTGATTG GTGACCGAAT GCAGAGATGC ACTGGTAGCA TCCAACCACT
    GAGCCCTGTT TGTAGCTTGT AAATGAATTT GGCTTCACCT TAAGTTGAGC
    TCGGTTTCAG TGAAGATAAG TGACTG

    Gene models with high sequence identity

    1. AT5G13980.2 [+] show detail - Glycosyl hydrolase family 38 protein
      E-value: 0; Score: 522.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase/deacetylase, beta/alpha-barrel 4.7e-76
    superfamily Families 57/38 glycoside transferase middle d 5.5e-30
    superfamily Glycoside hydrolase-type carbohydrate-binding 6.3e-28
    superfamily Glycoside hydrolase-type carbohydrate-binding 1.8e-103
    HMMPfam Glycoside hydrolase, family 38, core 4.2e-58
    HMMPfam Glycoside hydrolase, family 38, central domain 1.2e-21
    HMMPfam Glycosyl hydrolases 38, C-terminal 7.6e-16
    HMMPfam Glycosyl hydrolases 38, C-terminal 3.9e-72
    HMMSmart Glycoside hydrolase, family 38, central domain 1.9e-23
    Gene3D Glycoside hydrolase, family 38, core 2.8e-75
    Gene3D no description 2.4e-30
    Gene3D no description 9.4e-24
    Gene3D no description 1.2e-67
    HMMPanther LYSOSOMAL ALPHA-MANNOSIDASE (MANNOSIDASE ALPH 1.2e-168
    HMMPanther ALPHA-MANNOSIDASE 1.2e-168
    HMMPanther LYSOSOMAL ALPHA-MANNOSIDASE (MANNOSIDASE ALPH 2.8e-251
    HMMPanther ALPHA-MANNOSIDASE 2.8e-251

    See the detailed result >

    AT5G13980.2

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase family 38 protein
    Computational Description
    Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT3G26720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR