K12232

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12232

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12232

Determination of introduced cDNA(s)

  • J023099P18 - Rice Full-length cDNAs - Original: J023099P18

    full reading [+] show sequence

    Nucleotide sequence: J023099P18 - full reading 
    GACACACTGA CTCCATACGC ACAAGGCAAG AAAAAAAGAA GAAACAAAGA 
    GAGAAGAATT CCAAGGACCA AGAAATCGAG GCAATGGCTA AGCAGCTCAG 
    GCGGGTGCGC ACGCTGGGCC GGGGGGCGTC CGGCGCCGTG GTGTGGCTCG 
    CGTCCGACGA CGACTCAGGG GAGCTCATGG CCGTCAAGTC GGCCTCCGCC 
    GGCGGCGCCG CGGCGCAGCT GCGGCGAGAG GGGCGTGTCC TGTCCGGGCT 
    CTGCTCGCCG CACATCGTCC CCTGCCTCGG ATCGCGCGCC GCCGCGGGCG 
    GCGAGTACCA GCTGTTCCTC GAGTTCGCGC CCGGCGGGTC GCTCGCCGAC 
    GAGGCCGCCA GGAACGGGGG CTGCCTCCCG GAGCCGGCCA TCCGGGCGTA 
    CGCCGCTGAC GTGGCGAGGG GGCTGGCGTA CCTCCACGGG AATTCGCTGG 
    TGCACGGCGA CGTCAAGGCG AGGAACGTCG TGATCGGGAG CGACGGCCGG 
    GCGAGGCTCA CGGACTTCGG GTGCGCGAGG GTCATGGACT CGGCGGGGCC 
    GATCGGCGGC ACGCCGGCGT TCATGGCGCC GGAGGTGGCG CGCGGGGAGG 
    AGCAGGGGCC GGCGGCCGAT GTCTGGGCCC TCGGCTGCAC CATCATCGAG 
    ATGGCCACCG GCCGCGCGCC GTGGAGCGAC ATGGACGACA TCCTTGCCGC 
    AGTCCACCGG ATCGGGTACA CGAACGCCGT GCCGGAGGTT CCCGGGTGGC 
    TGTCAGCGGA GGCCAAGGAC TTCCTGGATG GCTGCTTCGA GAGGAACGCG 
    TCCGACAGGT CAACGGCGGC GCAGCTCCTG GAACACCCAT TCGTTGCCTC 
    CGCCGCGGCC CTCGACCGCT GGCCGGAGCC GGCGAAGCAA GAACGTGCAT 
    CCCCCAAGAG CACGCTGCAT GACGCGTTCT GGGACTCAGA CACCGACGAC 
    GAGGACGACG AGATGCCAAC CGGCGCGGCG GAGAGGATCG GTGCATTGGC 
    GTGCGCCGCC TCGGCCTTGC CGGACTGGGA CTCCGACGAA GGATGGATCG 
    AGGTGCACGA CGAGGTCTCC TTCGCCGCCG TCACGCCGCC GGCCAGCGAC 
    GCGGACTACT TCGTCTGGGC AGAACTGTCT GACCCAGAGA TGGAGCAGTT 
    CGCCGTCGCC GCGGATGGCG TCAACCATGT CCCGCGCAAT GAAGCAGAAG 
    CGATCGAATC CTCCATTAGG CAGGGCAGTT ACCTGCACGT ACATCTTGGC 
    AGTGGTAAAA ATGAAATTTT TCACCCGTTC GATACTGACG GGACTGAATC 
    AGTGAGATTC GATTGTGTTT GTAACAGGAA CAGAGTAATA AAATTAAATT 
    CCGCCC

    Gene models with high sequence identity

    1. AT2G32510.1 [+] show detail - mitogen-activated protein kinase kinase kinase 17
      E-value: 5e-59; Score: 225.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 41.305
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    Gene3D no description 5.3e-05
    Gene3D no description 5e-49
    HMMSmart Serine/threonine-protein kinase domain 4.9e-65
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.3e-12
    HMMPanther MITOGEN ACTIVATED PROTEIN KINASE-RELATED 2.9e-102
    HMMPanther MAPKK-RELATED SERINE/THREONINE PROTEIN KINASE 2.9e-102
    superfamily Protein kinase-like domain 8.4e-68
    Coil coiled-coil 0
    HMMPfam Serine/threonine-protein kinase-like domain 5e-51

    See the detailed result >

    AT2G32510.1

    Model type
    Protein coding
    Short Description
    mitogen-activated protein kinase kinase kinase 17
    Curator Summary
    member of MEKK subfamily
    Computational Description
    mitogen-activated protein kinase kinase kinase 17 (MAPKKK17); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 18 (TAIR:AT1G05100.1); Has 127064 Blast hits to 125367 proteins in 4754 species: Archae - 157; Bacteria - 14643; Metazoa - 47323; Fungi - 12478; Plants - 31679; Viruses - 660; Other Eukaryotes - 20124 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR