K12247

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12247

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12247

Determination of introduced cDNA(s)

  • J023005A19 - Rice Full-length cDNAs - Original: J023005A19

    full reading [+] show sequence

    Nucleotide sequence: J023005A19 - full reading 
    GAGCTGCACC CTTGCATCTT CTCTCTCTCT CTCTTCTTCT TCTTCTTCTT 
    CTCCATATCT CCTACTCCTC GTGAAGATCG ATCGACCATC GGCAATTTCA 
    TTCGGTAATA GTTAAGCTAA GATCAAATCA AGATTGGCGA AACGATGGAG 
    ATGGTGCTGC AGAGGACGAG CCACCACCCG GTGCCCGGGG AGCAGCAGGA 
    GGCGGCGGCG GAGCTGTCGT CGGCTGAGCT CCGGCGAGGG CCGTGGACCG 
    TCGATGAGGA CCTCACCCTC ATCAATTACA TCTCTGATCA CGGCGAGGGC 
    CGCTGGAACG CACTCGCACG CGCCGCCGGT CTGAAGAGGA CTGGGAAGAG 
    CTGCCGGCTC CGGTGGCTGA ACTATCTCCG GCCGGATGTG AAGCGCGGCA 
    ACTTCACCGC AGAGGAGCAG CTGCTCATCC TCGACCTCCA CTCCCGATGG 
    GGCAACCGAT GGTCCAAGAT AGCACAACAT TTGCATGGGA GGACGGACAA 
    CGAGATCAAG AACTACTGGA GGACCAGAGT GCAAAAGCAT GCCAAGCAAC 
    TCAATTGTGA TGTCAACAGC AAGAGGTTCA AGGATGCCAT GAAGTACCTA 
    TGGATGCCTC GCCTTGCCGA GCGCATCCAT GCCAGGGCTG GCGCTGTTGA 
    TGATAGCGGA GACTACAGCA ACAACGACTT ATCATGTGTA TCTGGTGTAA 
    CAATGGCCAC TGTTGCTAAT TGTTTTGATG GCTCTCCGAG CATGGTGACT 
    AGCTCATCTT CCGATTCGTT CACGTCGGAG TCACAAGATT TGAAGAAGAT 
    TAACTTACAT GTGCATGGTG ATGATGAGAA GATGAACTCT GAAGACTGGA 
    TGCAGGAGGT GGACCATGAG TTTTGGTCTA CAGAGATTCA GCCTAATAAT 
    GAACAGTTTC AGGACCAACA GCTTAACGGT TGGGTGCAAG GTTTTTCTGA 
    GGGTTTGTCC GAAACTCTAT GGAGTCTAGA GGACATATGG AAGATGCAAT 
    AAATTTTACA TTTACAAAGG ACATATTTGT AAAATAGAAT AGAGAGACAT 
    CAAGGAAGGC AAAGAGAAAA AGTTCTTTAG TCATATACTG TACGTTGAGA 
    CACTTAAGTT CTTTGCCAAC TTCAATGTTT TTTTTCTTTT ATTTTTGCTG 
    CCTCTTTCGA TCCCTGAAGG GGTTTTTGCC TTCTAGATGT CTAGGGGTTC 
    AAAGAGGACC AGAGGAGATA TATATGTGTT TGGATATGTT GATATATGAG 
    CTGATATATG CCTTACTATA TATATACTCC AGAATTGCAC TGAGGATTAC 
    ATATCCAATT CAGACATGCA AACCTTACCA GTTGCAATAT TGTAAATTAC 
    ATGTCCAATT TTGTAGTTTC ATCTTCCTCA TCATAAAAAA ATTATGTTGT 
    GTCG

    Gene models with high sequence identity

    1. AT5G49620.1 [+] show detail - myb domain protein 78
      E-value: 5e-69; Score: 258.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther R2R3-MYB TRANSCRIPTION FACTOR 1.7e-80
    HMMPanther Myb transcription factor 1.7e-80
    HMMSmart SANT, DNA-binding 1e-14
    HMMSmart SANT, DNA-binding 9.7e-15
    superfamily Homeodomain-like 2.6e-20
    superfamily Homeodomain-like 5.5e-09
    HMMPfam Myb, DNA-binding 1.2e-14
    HMMPfam Myb, DNA-binding 1.2e-14
    Gene3D Homeodomain-related 2e-14
    Gene3D Homeodomain-related 1.2e-15
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 23.169
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 16.194

    See the detailed result >

    AT5G49620.1

    Model type
    Protein coding
    Short Description
    myb domain protein 78
    Curator Summary
    Member of the R2R3 factor gene family.
    Computational Description
    myb domain protein 78 (MYB78); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 108 (TAIR:AT3G06490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR