K12247

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12247

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12247

Determination of introduced cDNA(s)

  • J023005A19 - Rice Full-length cDNAs - Original: J023005A19

    full reading [+] show sequence

    Nucleotide sequence: J023005A19 - full reading
    GAGCTGCACC CTTGCATCTT CTCTCTCTCT CTCTTCTTCT TCTTCTTCTT 
    CTCCATATCT CCTACTCCTC GTGAAGATCG ATCGACCATC GGCAATTTCA
    TTCGGTAATA GTTAAGCTAA GATCAAATCA AGATTGGCGA AACGATGGAG
    ATGGTGCTGC AGAGGACGAG CCACCACCCG GTGCCCGGGG AGCAGCAGGA
    GGCGGCGGCG GAGCTGTCGT CGGCTGAGCT CCGGCGAGGG CCGTGGACCG
    TCGATGAGGA CCTCACCCTC ATCAATTACA TCTCTGATCA CGGCGAGGGC
    CGCTGGAACG CACTCGCACG CGCCGCCGGT CTGAAGAGGA CTGGGAAGAG
    CTGCCGGCTC CGGTGGCTGA ACTATCTCCG GCCGGATGTG AAGCGCGGCA
    ACTTCACCGC AGAGGAGCAG CTGCTCATCC TCGACCTCCA CTCCCGATGG
    GGCAACCGAT GGTCCAAGAT AGCACAACAT TTGCATGGGA GGACGGACAA
    CGAGATCAAG AACTACTGGA GGACCAGAGT GCAAAAGCAT GCCAAGCAAC
    TCAATTGTGA TGTCAACAGC AAGAGGTTCA AGGATGCCAT GAAGTACCTA
    TGGATGCCTC GCCTTGCCGA GCGCATCCAT GCCAGGGCTG GCGCTGTTGA
    TGATAGCGGA GACTACAGCA ACAACGACTT ATCATGTGTA TCTGGTGTAA
    CAATGGCCAC TGTTGCTAAT TGTTTTGATG GCTCTCCGAG CATGGTGACT
    AGCTCATCTT CCGATTCGTT CACGTCGGAG TCACAAGATT TGAAGAAGAT
    TAACTTACAT GTGCATGGTG ATGATGAGAA GATGAACTCT GAAGACTGGA
    TGCAGGAGGT GGACCATGAG TTTTGGTCTA CAGAGATTCA GCCTAATAAT
    GAACAGTTTC AGGACCAACA GCTTAACGGT TGGGTGCAAG GTTTTTCTGA
    GGGTTTGTCC GAAACTCTAT GGAGTCTAGA GGACATATGG AAGATGCAAT
    AAATTTTACA TTTACAAAGG ACATATTTGT AAAATAGAAT AGAGAGACAT
    CAAGGAAGGC AAAGAGAAAA AGTTCTTTAG TCATATACTG TACGTTGAGA
    CACTTAAGTT CTTTGCCAAC TTCAATGTTT TTTTTCTTTT ATTTTTGCTG
    CCTCTTTCGA TCCCTGAAGG GGTTTTTGCC TTCTAGATGT CTAGGGGTTC
    AAAGAGGACC AGAGGAGATA TATATGTGTT TGGATATGTT GATATATGAG
    CTGATATATG CCTTACTATA TATATACTCC AGAATTGCAC TGAGGATTAC
    ATATCCAATT CAGACATGCA AACCTTACCA GTTGCAATAT TGTAAATTAC
    ATGTCCAATT TTGTAGTTTC ATCTTCCTCA TCATAAAAAA ATTATGTTGT
    GTCG

    Gene models with high sequence identity

    1. AT5G49620.1 [+] show detail - myb domain protein 78
      E-value: 5e-69; Score: 258.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther R2R3-MYB TRANSCRIPTION FACTOR 1.7e-80
    HMMPanther Myb transcription factor 1.7e-80
    HMMSmart SANT, DNA-binding 0.00000000000001
    HMMSmart SANT, DNA-binding 0.0000000000000097
    superfamily Homeodomain-like 2.6e-20
    superfamily Homeodomain-like 0.0000000055
    HMMPfam Myb, DNA-binding 0.000000000000012
    HMMPfam Myb, DNA-binding 0.000000000000012
    Gene3D Homeodomain-related 0.00000000000002
    Gene3D Homeodomain-related 0.0000000000000012
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 23.169
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 16.194

    See the detailed result >

    AT5G49620.1

    Model type
    Protein coding
    Short Description
    myb domain protein 78
    Curator Summary
    Member of the R2R3 factor gene family.
    Computational Description
    myb domain protein 78 (MYB78); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 108 (TAIR:AT3G06490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR