K12703

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12703

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12703

Determination of introduced cDNA(s)

  • J023106M02 - Rice Full-length cDNAs - Original: J023106M02

    full reading [+] show sequence

    Nucleotide sequence: J023106M02 - full reading
    GGATTGGGCA ATCATCCAAT ACATATCTTG GCTTCTTGGC TGGACTCCAG 
    TAACCGAGGT CGCGTGCCTC CGCTCGCTCG CTCGCTCATC GTCGTCGTCT
    TCCTCGGGGC CTCTCTCGTC GTGGAGCGGA GGCGTGCCGC GTAGCAGGGG
    TGAGCCCATG TGGGTGGATT GATTTGGGGG GATTTCGTGC TGTTTTGGTG
    GAAGAGCTCT CTTCTGTACG GTTTCTTGGT TGCGCTCTCG CACCAAGAAC
    ATCTCCTTTT TCCTTCTTGC TCCTCTCTCT CTCTCTCTCT CTCTCTCTCT
    CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
    GGGTCTCGGA CTCTCGGCTC TTGATTCTTG GTTCTTGGTG AGTGTAGGCG
    AGAATAAGGC GGGTTCTTGG TGGGTTTATA AGGGAATTCA ACTGAGGTGA
    GAAATGGGGG CAAAGGACTC CAAGCCCTCA TACAGCTATT CTTCTTCATA
    TGATCATGGG AATTCATCAT CGGGATATAA CTCGAGATAC CCTGCATACC
    CTGCAAATGC ATCTTCCAGT CAGAACACAA GGTATGCTCC TTCTATGGAG
    AACTATGTGC AGCCAGAAAC GCATGCCAGG TTGCAGAGGA AGTACTCGAG
    GATTGGTGAT GACTACCGCT CTCTGAATCA AGTGACTGAA GCTTTGGCAC
    AAGCAGGTCT TGAATCATCA AATCTTATTG TAGGCATTGA TTTTACAAAG
    AGCAATGAAT GGACAGGTAA ACTTTCCTTC AATCGCCGAT GTCTGCATGA
    TATTGGAAAC ACTCCAAATC CATATGAGCA AGCAATATCT ATTATTGGAA
    GGACACTTTC AGCTTTTGAT GAAGATAATT TGATTCCTTG CTTTGGATTT
    GGTGACGCAT CAACTCATGA TCAGGAGGTA TTCAGCTTTT ATCCAGAGAA
    CCGCCCATGC AACGGATTTG AAGAGGCATT AGAAAGATAC AGAGAAATTG
    TTCCGACTCT TCGATTAGCT GGACCAACAT CTTTTGCCCC GATGATTGAA
    ACAGCAATTG GTATTGTAGA CAGCACTGGT GGTCAGTATC ATGTTCTTCT
    GATAATAGCC GATGGACAGG TTACTCGAAG TGTTGATACA CAGTCTGGGC
    AGTTAAGCCC GCAGGAGCGT GATACGATTG ATGCTATAGT AAAAGCTAGC
    CAGTTCCCCT TGTCTATTGT TCTTGTTGGG GTGGGTGATG GACCATGGGA
    CATGATGCAT CAGTTTGATG ACAATATACC TGCTCGCTCA TTTGACAATT
    TCCAGTTTGT GAATTTCACG GACATCATGT CAAAGAGCAT AGCAGCTGAC
    AGGAAGGAGG CAGAATTTGC ACTATCCGCC TTGATGGAAA TCCCAACACA
    ATACAAGGCA ACACTTGATC TCCAACTTCT AGGCCGTCGC CAAAGAATAC
    AGCCAAGAAT TCCTCTGCCG CCACCTATGA GGAATGCTTA TTCGAGGTCT
    ACTAGCTTTG ACCAACATTC TGGTGTTTAT TCACGATCTA GTAGCTTCGG
    CCCACAAACA AGTGGCTTTC AGCAATCTGA AAGCTTCAAA CAGAGACAGC
    CTGTGGCTAC CACTGCACCT GACACTTATA CCTCGGAAAG TTCTTTAGAA
    GGAAGACTTT TGTGCGCTAT CTGTATGGAT AAATCAAAGG ATCTTGCATT
    TGGATGTGGA CATCAGACCT GTTATGAATG CGGGAAGAAT TTGGTGCGCT
    GCCCTATGTG CCAGCAGCAT ATAACCACAA GGATCAGGCT GTACTGAGAA
    AACAAAAATG GATATCCTGA AGTTTCTGAA GCCTGCAGAA ACAGAATCTC
    CAACATCAGA AGAAACTCCT GTGCAAAATT TATGAACCAG CCTAAATTGT
    ACTGTTCTTT CGTCTTGTAA TTGGTGGTTT ACTATTATTA TTGCAGTGAG
    AAATGTTTAG GCAGATAGTG ATCCATATAA AAAGCTAAGG CACACACTGT
    AGTATTAACT ACAGTAGTTA TGTGAAGAAG AGGTACACTA AATAATGTAC
    AGTAATTAGC TTCTCTATTA TACATTCTCC TTTCTTTCCC TTGGT

    Gene models with high sequence identity

    1. AT5G14420.4 [+] show detail - RING domain ligase2
      E-value: 2e-135; Score: 479.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    ProfileScan Zinc finger, RING-type 11.058
    superfamily RING/U-box 0.00000000011
    superfamily vWA-like 0.0000000053
    HMMSmart von Willebrand factor, type A 0.00000012
    HMMSmart Zinc finger, RING-type 0.00034
    HMMPanther COPINE 2.5e-118
    HMMPfam Copine 4.7e-50
    Gene3D no description 0.00055

    See the detailed result >

    AT5G14420.4

    Model type
    Protein coding
    Short Description
    RING domain ligase2
    Computational Description
    RING domain ligase2 (RGLG2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase1 (TAIR:AT3G01650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR