K12703

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12703

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12703

Determination of introduced cDNA(s)

  • J023106M02 - Rice Full-length cDNAs - Original: J023106M02

    full reading [+] show sequence

    Nucleotide sequence: J023106M02 - full reading 
    GGATTGGGCA ATCATCCAAT ACATATCTTG GCTTCTTGGC TGGACTCCAG 
    TAACCGAGGT CGCGTGCCTC CGCTCGCTCG CTCGCTCATC GTCGTCGTCT 
    TCCTCGGGGC CTCTCTCGTC GTGGAGCGGA GGCGTGCCGC GTAGCAGGGG 
    TGAGCCCATG TGGGTGGATT GATTTGGGGG GATTTCGTGC TGTTTTGGTG 
    GAAGAGCTCT CTTCTGTACG GTTTCTTGGT TGCGCTCTCG CACCAAGAAC 
    ATCTCCTTTT TCCTTCTTGC TCCTCTCTCT CTCTCTCTCT CTCTCTCTCT 
    CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT 
    GGGTCTCGGA CTCTCGGCTC TTGATTCTTG GTTCTTGGTG AGTGTAGGCG 
    AGAATAAGGC GGGTTCTTGG TGGGTTTATA AGGGAATTCA ACTGAGGTGA 
    GAAATGGGGG CAAAGGACTC CAAGCCCTCA TACAGCTATT CTTCTTCATA 
    TGATCATGGG AATTCATCAT CGGGATATAA CTCGAGATAC CCTGCATACC 
    CTGCAAATGC ATCTTCCAGT CAGAACACAA GGTATGCTCC TTCTATGGAG 
    AACTATGTGC AGCCAGAAAC GCATGCCAGG TTGCAGAGGA AGTACTCGAG 
    GATTGGTGAT GACTACCGCT CTCTGAATCA AGTGACTGAA GCTTTGGCAC 
    AAGCAGGTCT TGAATCATCA AATCTTATTG TAGGCATTGA TTTTACAAAG 
    AGCAATGAAT GGACAGGTAA ACTTTCCTTC AATCGCCGAT GTCTGCATGA 
    TATTGGAAAC ACTCCAAATC CATATGAGCA AGCAATATCT ATTATTGGAA 
    GGACACTTTC AGCTTTTGAT GAAGATAATT TGATTCCTTG CTTTGGATTT 
    GGTGACGCAT CAACTCATGA TCAGGAGGTA TTCAGCTTTT ATCCAGAGAA 
    CCGCCCATGC AACGGATTTG AAGAGGCATT AGAAAGATAC AGAGAAATTG 
    TTCCGACTCT TCGATTAGCT GGACCAACAT CTTTTGCCCC GATGATTGAA 
    ACAGCAATTG GTATTGTAGA CAGCACTGGT GGTCAGTATC ATGTTCTTCT 
    GATAATAGCC GATGGACAGG TTACTCGAAG TGTTGATACA CAGTCTGGGC 
    AGTTAAGCCC GCAGGAGCGT GATACGATTG ATGCTATAGT AAAAGCTAGC 
    CAGTTCCCCT TGTCTATTGT TCTTGTTGGG GTGGGTGATG GACCATGGGA 
    CATGATGCAT CAGTTTGATG ACAATATACC TGCTCGCTCA TTTGACAATT 
    TCCAGTTTGT GAATTTCACG GACATCATGT CAAAGAGCAT AGCAGCTGAC 
    AGGAAGGAGG CAGAATTTGC ACTATCCGCC TTGATGGAAA TCCCAACACA 
    ATACAAGGCA ACACTTGATC TCCAACTTCT AGGCCGTCGC CAAAGAATAC 
    AGCCAAGAAT TCCTCTGCCG CCACCTATGA GGAATGCTTA TTCGAGGTCT 
    ACTAGCTTTG ACCAACATTC TGGTGTTTAT TCACGATCTA GTAGCTTCGG 
    CCCACAAACA AGTGGCTTTC AGCAATCTGA AAGCTTCAAA CAGAGACAGC 
    CTGTGGCTAC CACTGCACCT GACACTTATA CCTCGGAAAG TTCTTTAGAA 
    GGAAGACTTT TGTGCGCTAT CTGTATGGAT AAATCAAAGG ATCTTGCATT 
    TGGATGTGGA CATCAGACCT GTTATGAATG CGGGAAGAAT TTGGTGCGCT 
    GCCCTATGTG CCAGCAGCAT ATAACCACAA GGATCAGGCT GTACTGAGAA 
    AACAAAAATG GATATCCTGA AGTTTCTGAA GCCTGCAGAA ACAGAATCTC 
    CAACATCAGA AGAAACTCCT GTGCAAAATT TATGAACCAG CCTAAATTGT 
    ACTGTTCTTT CGTCTTGTAA TTGGTGGTTT ACTATTATTA TTGCAGTGAG 
    AAATGTTTAG GCAGATAGTG ATCCATATAA AAAGCTAAGG CACACACTGT 
    AGTATTAACT ACAGTAGTTA TGTGAAGAAG AGGTACACTA AATAATGTAC 
    AGTAATTAGC TTCTCTATTA TACATTCTCC TTTCTTTCCC TTGGT

    Gene models with high sequence identity

    1. AT5G14420.4 [+] show detail - RING domain ligase2
      E-value: 2e-135; Score: 479.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    ProfileScan Zinc finger, RING-type 11.058
    superfamily RING/U-box 1.1e-10
    superfamily vWA-like 5.3e-09
    HMMSmart von Willebrand factor, type A 1.2e-07
    HMMSmart Zinc finger, RING-type 0.00034
    HMMPanther COPINE 2.5e-118
    HMMPfam Copine 4.7e-50
    Gene3D no description 0.00055

    See the detailed result >

    AT5G14420.4

    Model type
    Protein coding
    Short Description
    RING domain ligase2
    Computational Description
    RING domain ligase2 (RGLG2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase1 (TAIR:AT3G01650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR