K12707

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12707

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12707

Determination of introduced cDNA(s)

  • J013002G08 - Rice Full-length cDNAs - Original: J013002G08

    full reading [+] show sequence

    Nucleotide sequence: J013002G08 - full reading 
    GAGGAGTCGG AGTCCCCCAC GCTTCGTCCT CTGCTTCCCA CGCGCCACAA 
    ATTTCTTCGC CTTCTTCCCA CGCAACGCCT CGCCGGAGAA ACAGGAGACG 
    AGTAGTAGAC GACTAGTGCG AGCCAAGGGC ATGGCGCGGC AGCAGCAGCA 
    GCGGGAGGAG GAGAGGGCCC CAATGGGCGC GGCCCAGCGG CGGCTGCGCG 
    CCGTCTCCGG CCACCTCCAG CCGCCGACGG AGTCCGGCGG CGTTGACCTC 
    GCCGCCAACC CCACCGCCGG CGAGTACGCG CACGTGCAGG GCTACAGTGC 
    TGTACTCCCT GAGAAGTTGC AAACTGGAAA GTGGAATGTG TACAGATCCG 
    CAAAGTCACC TCTTAAGTTA ATAAATAGAT TCCCTGATAA CCCAGACATT 
    GGAACGCTTC ATGATAACTT TGTGTATGCA GTTGAAACCT TTAGGGACTG 
    TAGATACCTG GGCACAAGAG TCTGTGTTGA TGGAACAGTT GGGGACTACA 
    AATGGATGAC ATATGGAGAA GCTAGTACAA GCCGGACTGC GATAGGTTCT 
    GGTCTTATTT ACCATGGAAT ACCTGAAGGT GCGCGCATTG GTTTGTATTT 
    TATAAACAGA CCTGAGTGGA CCATAGTTGA TCATGCCTGT GCGGCATATT 
    CATATGTATC CGTGCCACTT TATGATACTC TAGGTCCAGA TGCAGTTCAG 
    TTCATTGTTA ACCATGCGAC AGTACAAGCT ATTTTCTGTG TGCCTCAAAC 
    ACTAAGCACT CTACTAAGCT TTATAACTCA AATGCCGTGT GTTCGCCTTA 
    TAGTGGTAAT TGGTGGAGAC AATGCAAATA TGCCATCTAC CCCAACAGCT 
    ACTGGAGTGG AAATTATAAC TTACTCCAGA CTACTTAGCC AGGGAAGGAT 
    GAGTTCTCAA TCTTTTCGCC CTCCAAAACC TGAAGATATT GCCACTATTT 
    GTTACACTAG TGGCACTACT GGCACACCGA AGGGAGTTGT TCTTTCTCAT 
    GGGAATTTAA TTGCAAATGT AGCAGGATCA AGCCTAGTCA TTAAGTTTTA 
    CCCATCTGAT GTGTATATCT CATATCTACC TTTAGCTCAC ATCTATGAGA 
    GAGTTAACCA GGTCTCAGTG GTTCACTATG GTGTTGCCAT TGGTTTCTAC 
    CAAGGGGATA ATTTGAAGCT GATGGATGAT CTGGCTGCAT TGAGACCAAC 
    AGTATTTCCT AGTGTGCCTC GGCTATATAA TAGAATTTAT GCTGCAATTA 
    CAAATGCTGT CAAGGAGTCT GGAGGGTTGA AAGAAGGATT GTTTCATGCT 
    GCATACAATG CTAAGAGGCA AGCGATTATT AATGGGAGAA ATCCGTCCCC 
    AATGTGGGAC AGGTTGGTAT TTAACAAAAT AAAAGCTAGG CTTGGTGGAC 
    GTGTGAGGCT TATGACTTCA GGCGCTTCTC CATTGTCAGC TGATGTAATG 
    GAATTCCTAA GAATATGTTT TGGTGGTGAA GTACTCGAAG GATATGGAAT 
    GACAGAGACA TCATGTATCA TCTCTGCAAT GAATATTGGT GATAGGTTAA 
    TTGGTCATGT CGGATCTCCA AATCCATCTT GTGAGATTAA ACTAGTGGAT 
    GTCCCAGAAA TGAATTACAC CTCTGAGGAT GAACCATATC CTCGTGGAGA 
    AATCTGTGTT AGGGGACCTA CGATATTCTG TGGTTACTAT AAAGACGAAA 
    TCCAAACTAG AGAGGCTGTT GACGAGGATG GTTGGTTACA CACTGGAGAC 
    ATAGGTTTGT GGATGCCTGG AGGGCGTCTA AAAATTATAG ATAGGAAAAA 
    GAACATTTTC AAGTTAGCTC AAGGAGAATA CATAGCTCCC GAGAAGATTG 
    AGAATGTCTA TGCTAAGTGC AAGTTTATTG CGCAGTCCTT TATATATGGT 
    GATAGTTTAA ACTCTTCTTT GGTTGCCGTA GTAGCAGTTG AACCAGATGT 
    GTTGAAGGCT TGGGCTGCAT CTGAGGGAAT CCAGCACGAG GATTTAAGAC 
    AGCTTTGTGC TGATCCGAAA GCAAGATCTG CTGTCCTGGC TGAGATGGAC 
    TCTATTGGAA AGGAAGCACA GCTAAGAGGT TTTGAATTTG CCAAAGCTGT 
    TACCCTTGTT GCTGAACCTT TCACATTAGA AAATGGTCTC CTCACCCCAA 
    CTTTCAAGGT CAAAAGACCG CAAGCTAAGG CATACTTTGC AAAAGAAATC 
    GCAGATATGT ATGCACAACT GCGCCAAGCA GAACAGATAA AACCTAAGCT 
    GTAACTACCC GAGTGACAAT CGGAGTAAAA GTTCTAGCAA CAAACTACAA 
    ATGACTGGCT TGGTATAGTG AAGGCAACTG TGAATGAACT CTGTTGGATA 
    TGTCCACGAA TGCTTGATAA TCATCTAATA GGATGATCAG GTAAAAGAAT 
    AGCCTGTTTT ATGTACATCT GTAAGATGAA ATGAAAAAAG ATGTAGACAT 
    GTTAAATGTC ATATATATGA ATCCATTGAA TTTCACCTGA CTATCATAGG 
    AATATAAGGT AAAACTTTCC CTCTT

    Gene models with high sequence identity

    1. AT3G05970.1 [+] show detail - long-chain acyl-CoA synthetase 6
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan AMP-binding, conserved site 0
    HMMPanther LONG-CHAIN-FATTY-ACID COA LIGASE 2.3e-286
    HMMPanther ATP-DEPENDENT AMP-BINDING ENZYME FAMILY MEMBE 2.3e-286
    HMMPfam AMP-dependent synthetase/ligase 4.3e-112
    superfamily Acetyl-CoA synthetase-like 2.2e-129
    Gene3D no description 1.6e-14
    Gene3D no description 5.6e-32

    See the detailed result >

    AT3G05970.1

    Model type
    Protein coding
    Short Description
    long-chain acyl-CoA synthetase 6
    Curator Summary
    encode peroxisomal long-chain acyl-CoA synthetase (LACS) isozymes
    Computational Description
    long-chain acyl-CoA synthetase 6 (LACS6); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity; INVOLVED IN: long-chain fatty acid metabolic process; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: long-chain acyl-CoA synthetase 7 (TAIR:AT5G27600.1); Has 54528 Blast hits to 52136 proteins in 3333 species: Archae - 925; Bacteria - 35165; Metazoa - 2570; Fungi - 2253; Plants - 2087; Viruses - 1; Other Eukaryotes - 11527 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR