K12718

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12718

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12718

Determination of introduced cDNA(s)

  • J033101H12 - Rice Full-length cDNAs - Original: J033101H12

    full reading [+] show sequence

    Nucleotide sequence: J033101H12 - full reading
    GATTACTCTC CTTCCCTCTC CTCTCCTCTC CTCTCTCGCC ATCTCTCTCT 
    CCTCCGATCT GCGCAGCCAG CCGGAGCCAC CGCCGCCTCT CTGTCGCCGC
    CTCGCCCGCG GGGGCTCCGG CGAACGGGCC GCCCGCCTCG ACCTCCCCTC
    CTTCCCGTCG CCGAGCTAGC CTCTCCACGC TGCGCGGGGC CGCCTCCGGC
    GAGCAGGCTG GGCCTCGGGC CTCGGGGCCT CATTCCACCG CCCTGCGCCT
    CTCGGTTCGG ATCGGCTTGA AGGTGAAGGT ATGGACTTCG GTGATTCTAG
    ACGCAAGCCT AATGTCGTCG GGAAGTTCAC CGTAGCTGTT GCACTCACGG
    TCATGTGCAT CATTGTGTTG AAACAGTCGC CTGGTTTTAC CAGTACAAGT
    GTGTTCTCTC GCCATGAAAT TGGTGTGACT CATGTGTTGG TGACTGGAGG
    AGCTGGATAC ATTGGGTCAC ATGCTACTCT TCGTCTACTT AGGGACAACT
    ACCGAGTTAC CATTGTGGAT AACCTTTCTA GAGGGAACAT GGGAGCTGTC
    AGAGTCCTTC AACGTTTGTT TCCAGAGCCT GGGAGGCTTC AGTTTATTTA
    TGCTGATTTA GGCGATGCGA AAGCTGTTAA CAAAATATTT TCAGAAAATG
    CATTCGATGC TGTTATGCAC TTTGCTGCCG TTGCTTACGT TGGTGAGAGC
    ACGTTGGAGC CACTGAGGTA CTACCACAAC ATAACATCAA ATACATTGAC
    AGTGCTTGAG GCAATGGCAG CATATAATGT AAAAACTCTG ATATACTCAA
    GTACTTGTGC AACATATGGT GAACCTGACA CAATGCCTAT CACAGAAGCA
    ACCCCTCAGA ATCCTATCAA TCCATATGGG AAGGCAAAAA AGATGGCAGA
    GGACATCATT TTAGATTTCT CTAAGAGATC AGAAATGGCA GTCATGATCT
    TAAGATACTT CAACGTCATT GGATCAGACC CAGGGGGGCG GTTAGGGGAA
    GCTCCACGAC CAGAGCTGCG TGAGCATGGA CGGATTTCTG GTGCTTGCTT
    TGATGCAGCA CTGGGAATCA TTCCAGGTTT GAAGGTTCGG GGAACTGATT
    ACCCTACAGC TGATGGAACT TGCATAAGGG ACTATATTGA TGTCACGGAT
    CTCGTTGATG CTCATGTGAA AGCTCTTGAT AAAGCTCAGC CTGGCAAAGT
    TGGAATCTAC AATGTTGGCA CAGGACATGG TAGATCAGTG AAGGAGTTTG
    TAGAAGCATG TAAGAGCGCA ACAGGAGCTA GCATCAAGGT TTCATTCCTT
    ACCCGGAGAC CAGGAGACTA TGCTGAAGTT TACAGTGACC CATCCAAAAT
    CCATGACGAG CTGAACTGGA CAGCCCGTTA CATTGATCTT CGCGAAAGCC
    TTTCAACTGC ATGGAAATGG CAGAAAGCAC ACCCGAATGG GTATGGATCG
    GCCTGATTCA GGGTTTAATA GATTCAGACT TAAGGTACAC AGATTCTCAG
    GTCCATGTGC AGAAATCATA TATCCTTCAG AAAATTGGTT CTTCAGCACA
    AACATAGTGC CAGGCACAGA AGTGTTCTGA ATTTTTTTGG CAGCATTTGG
    AAGAAGATAC AGAAAGAATG GCCCCTCTAT TCCTGGCTTA GGATCATACA
    TATAGTTTTT TTTTTTCCTT GACATTTTTT TTAATCTTTT CTACTCGTTA
    AAGCATAATA TAATAACCAA TAGAAAATGT GTTGTAGACA AGGTAGATAA
    CTATCATGTA TGAACGTTCA TGGTGTTGAA TGAAAGGATA TATGAATAAG
    TAGATGTTTG CTTATTAGTG GAAGTTAAAT TTCCATTTTG GCAAGCTCAG
    CGGTTAAATT TCTTGTATGT GAAGCAAGGG GTGACTGGGG ACAATGCATT
    GCTGTGCACA ACTCCTGGTC TCACTTGCAA AAACATTTCT TACATGTAAC
    TAGAGTACAA GTGGTTGGAT TATACCGTAT GTACATGAAC GTCAATTCGC
    C

    Gene models with high sequence identity

    1. AT1G30620.2 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 0; Score: 647.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 3.59998852907783e-60
    HMMPanther UDP-glucose 4-epimerase 0
    superfamily NAD(P)-binding domain 3.99998544139406e-93
    HMMPfam NAD-dependent epimerase/dehydratase 3.7e-49
    HMMTigr UDP-glucose 4-epimerase 0
    HMMPanther PTHR10366 0

    See the detailed result >

    AT1G30620.2

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Curator Summary
    encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.
    Computational Description
    MURUS 4 (MUR4); FUNCTIONS IN: UDP-arabinose 4-epimerase activity, catalytic activity; INVOLVED IN: plant-type cell wall biogenesis, arabinose biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G20460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR