K12729

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12729

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12729

Determination of introduced cDNA(s)

J023082D02 - Rice Full-length cDNAs - Original: J023082D02

full reading [+] show sequence

GAGGGAGAGA CATACACATC CACAATCGGC AGCTATTAAT TACACAGAGA 
GCTCCTAGCT TGCCAGCTTG ATTAAGCAAA GGAGTGACGT CGTACTGCAC 
TGCGCAGCCA TGGCGACTCT GGAGACGTGG GTAGGGTTCG GGTCGGCCAT 
GGCCGGCGTG GGCTTGCTTT GGTCCCGGAT GCCGGAGCAC GTCCACGAGG 
AGGCTAGGTA CATCATCAGT AGCGTGGTCC CCATGGTTAT GTCCTACTTC 
AACCCCTACG AGCAGATCAC CGTGTCCGAG TACGGCGAGG AGCGGTTCCG 
GCGGAACAAG ATGTTCGACG CCGTCTCCAC CTACCTGAGG AGCGCGTGCC 
TGGGCAGCGC AACCAAGCTC AAGGCCAAGC TCGGCAACAA CATCGGGGAT 
GACCCGCTTG TGATTCTAGA CGAGAACCAG GAGGTCGTCG ACTGCTTGGA 
TGGTGCTCGC ATGTGGTGGA GGCTGTACCC CAAGGCCTCC AAGAACACAG 
GGAGCACCAT CATCAGCATG TTCCCCGGGG ACACGGACGA GCCGCGGTGC 
TACAGGCTGG TGTTCCACAA GCGCCACCGC CAGCTCGTGC TCAAGACCTA 
CCTGCCCGGC ATCATCCGGC GGTGGCGCGA GCTAACCGCC AAGGACCGGC 
AGAGGCTGCT GTTCACCAAC CACTCCAAAC AAGGGGAGAT CAGCATGTGG 
ACCAGTGTCC CGTACAATCC CCCGTCGACG TTCGACATGC TCGCCATGGA 
CCATGCCAAG AAGGTTGAGA TTATGGACGA TCTCAGGGCG TTCCAGAAGG 
GGAAGGAATA CCACTCCAAG GTCGGCAAGG CGTGGAAGCG GGGCTACCTT 
CTGTATGGGC CACCGGGCAC TGGCAAGACC ACTATGATTG GGGCTATGGC 
CAATTTCCTC GACTACGACG TCTACGACCT CGACCTAACA TCTGTCAAGG 
ATAACGCCGA GCTGCGGAAG CTCTTCCTCG ATACGACGGA CAAATCCATC 
ATCGTTATCG AGGACATCGA CGCCATCGAG GTCGAGCTCA CTACCAAGCG 
CAAGGGCAAG AAGATGGACA ACAGCGACGA AGTCGACAAC AACCATGTGC 
TGGTCGAGCT TTCCAACAAG ACTGATGATA AAAGCAAAGT GACGCTGTCA 
GGCCTACTCA GCTTCGTCGA TGGGCTGTGG TCGGCGTGCG GCAGCGAGAG 
GGTGTTCGTG TTCACAACGA ACCACGTTGA CAGGCTCGAC CCGGCGCTGA 
TTCGGCCGGG GAGGATGGAC AAGCACATCG AGATGTCCTA CTGCCGCCTC 
GATGCCTTTA AGGTGCTGGC CAAGAGCTAC CTGGACATCA CCGAGCACTC 
GCTTTTTGGT GAAATCGGGA GACTGCTCGA CGAGACCGAC ACGACTCCGG 
CAGATGTTGC CGATAACCTC ATGCCGCGGG GTAAGAGGAA CGGTGAAATC 
AGTCGACTGA TCGATGAGAT CGACGCACCG GCAGACGTGG CCGGTAATCA 
CATGCTACGG TGCAAGAGGA AGAGAGACGC GGACGAGTGC CTGGCAGGTT 
TAGTGGAAAC ACTGAAGAAG GCCAAGATGG AATCAGCAAC ACCTCCTATG 
GACACAATCG AGGAAGAGGC CAACAAAGAG GAACAAACCT AACACAGAAG 
AAAGCTAGAC AGGGGCTGAT ACATGATGAG GGCTGCTACT TCTTGGCCTC 
CTCGGTTTGC GTGTCCTATT TTACCTGACT TCCGTGTAAT GGTGCGTACG 
GGTTTATTAG TCACTTAAGC TAGCATAAGC CATACCATAA AATGGCAAAA 
TATATAAAAA TAGTGGTGTA TTACGACTTA TGTTCTGGAT CTATTATTTC 
ACGCTCCATA ATTCGTCTGG TCAACCTTGT AAATTCTGAT AATTATATGT 
TTATATATAT GTGTGGAGAT TATGG

Gene models with high sequence identity

AT3G28580.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
E-value: 1e-103; Score: 374.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	1.1e-33
superfamily	P-loop containing nucleoside triphosphate hyd	1.6e-40
HMMPanther	AAA-TYPE ATPASE-RELATED	2.3e-181
HMMPanther	BCS1 AAA-TYPE ATPASE	2.3e-181
HMMPfam	ATPase, AAA-type, core	8.3e-19
HMMSmart	ATPase, AAA+ type, core	0.000000079

See the detailed result >

AT3G28580.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-ATPase 1 (TAIR:AT5G40010.1); Has 26015 Blast hits to 22183 proteins in 2894 species: Archae - 1297; Bacteria - 7409; Metazoa - 4737; Fungi - 2999; Plants - 2564; Viruses - 69; Other Eukaryotes - 6940 (source: NCBI BLink).
Link: InterPro Scan - TAIR