K12805

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12805

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12805

Determination of introduced cDNA(s)

  • J013000E16 - Rice Full-length cDNAs - Original: J013000E16

    full reading [+] show sequence

    Nucleotide sequence: J013000E16 - full reading 
    GTCCCAGCCA GCTCGAGCGA GCGAAGCCAG CAGCAGAAGC AGTAGAGAGA 
    AAGTAGAGAG ATGGAGGGGA AGGAGGAGGA TGTCCGGCTG GGAGCCAACA 
    AGTTCTCGGA GAGGCAGCCG ATCGGCACGG CGGCGCAGGG CTCCGACGAC 
    AAGGACTACA AGGAGCCGCC GCCGGCGCCG CTGTTCGAGC CAGGGGAGCT 
    CAAGTCGTGG TCCTTCTACC GCGCAGGGAT CGCCGAGTTC ATGGCCACCT 
    TCCTCTTCCT TTACATCACC GTCCTCACCG TCATGGGGGT CAACAACTCC 
    ACCTCCAAGT GCGCCACCGT CGGCATCCAG GGCATCGCCT GGTCCTTCGG 
    CGGCATGATC TTCGCCCTCG TCTACTGCAC CGCCGGCATC TCCGGCGGCC 
    ACATCAACCC GGCCGTCACC TTCGGCCTCT TCCTCGCCAG GAAGCTGTCC 
    CTCACCAGGG CCCTCTTCTA CATGGTGATG CAGTGCCTCG GCGCCATCTG 
    TGGCGCCGGC GTCGTCAAGG GCTTCCAGAA GGGCCTGTAC GAGACCACCG 
    GCGGCGGCGC CAACGTCGTC GCGCCCGGCT ACACCAAGGG CGACGGCCTC 
    GGCGCCGAGA TCGTCGGCAC CTTCATCCTC GTCTACACCG TCTTCTCCGC 
    CACCGACGCC AAGAGGAACG CCAGGGACTC CCACGTTCCG ATCCTTGCCC 
    CACTGCCAAT CGGGTTTGCG GTGTTCTTGG TTCACCTGGC CACCATCCCC 
    ATCACCGGCA CCGGCATCAA CCCAGCGAGG AGCCTTGGCG CTGCCATCAT 
    CTACAACAGG GGCCATGCCT GGGATGACCA TTGGATCTTC TGGGTTGGCC 
    CCTTCATTGG CGCTGCCCTT GCTGCCATCT ACCACCAGGT GGTCATCAGG 
    GCAATTCCAT TCAAGAGCAG GTCGTAACCT GCATCAGCTA TTATCACTGT 
    CAAGATGCCA ATCCAGAGCA AGCTGTTTCT GGTGGGCGCG GCTGTTTCCC 
    GCTGCCTGCT TTGTTAGTAA TTATTGTGGA GTCGACGTTC CTCTTCAAGT 
    TTGTTGTACT ACTGTTTTTA TCTGAACACA GACTTGTAAT TTCAGTACTC 
    AGTTGTGTAT CCCTCTTTTA CTATGTGCAA ATTAAGCTAT CCTCCTCCTA 
    TTGGAGTTCG GTTC

    Gene models with high sequence identity

    1. AT4G23400.1 [+] show detail - plasma membrane intrinsic protein 1;5
      E-value: 1e-150; Score: 529.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Major intrinsic protein 3.1e-86
    superfamily Major intrinsic protein 1.3e-61
    HMMTigr Aquaporin 9.5e-98
    Gene3D Major intrinsic protein 2e-63
    PatternScan Major intrinsic protein, conserved site 0
    FPrintScan Major intrinsic protein 3.6e-70
    FPrintScan Major intrinsic protein 3.6e-70
    FPrintScan Major intrinsic protein 3.6e-70
    FPrintScan Major intrinsic protein 3.6e-70
    FPrintScan Major intrinsic protein 3.6e-70
    FPrintScan Major intrinsic protein 3.6e-70
    HMMPanther AQUAPORIN-RELATED 3.9e-200
    HMMPanther Major intrinsic protein 3.9e-200

    See the detailed result >

    AT4G23400.1

    Model type
    Protein coding
    Short Description
    plasma membrane intrinsic protein 1;5
    Computational Description
    plasma membrane intrinsic protein 1;5 (PIP1;5); FUNCTIONS IN: water channel activity; INVOLVED IN: response to salt stress, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1;4 (TAIR:AT4G00430.1); Has 10720 Blast hits to 10702 proteins in 2215 species: Archae - 88; Bacteria - 5150; Metazoa - 1472; Fungi - 448; Plants - 2512; Viruses - 2; Other Eukaryotes - 1048 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR