K12821

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12821

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12821

Determination of introduced cDNA(s)

  • J013046I17 - Rice Full-length cDNAs - Original: J013046I17

    full reading [+] show sequence

    Nucleotide sequence: J013046I17 - full reading 
    GGAGTGATCG AGCGGCGTCG CGGGCAGGGG GCAGGCAGGC CACTACTAGT 
    ACTAGTAGTA GTAAAAGATC TAGCGCCGCA TACACCACCA CACGAGACGA 
    AGCAGCAGCG GAGAGGGGCC TCTCGTCGGC GACGCACGCC GGCCGGAGGA 
    GGACGACGGC GACGGCGACG GCGAGGCTTC CGCTCCAACC AACCAACCAA 
    ATCACAACCG CATCCACCGG AGGGATTCCC TCCAGATCGC CATTCGATTC 
    GCTGCTGCTG CTCCGCCTCG TCGTCGCCGT CGTCGAGTTC GTCTCGCAAT 
    CGCCTCCTCC TCTCCCCCTG GGCCGTGCTT AGGAGTATCT TCCTCGCGAC 
    TGTGGGTTAG TCCTCCTAGT GGGTTTATGC ATGACAGCCC CTGCAGTCCT 
    TCCAAATGAG TTAGAAGGGA TCTCCCGTTC TCAAAGAGTA GAGCTGTTCC 
    GAGACGCTAG TTGCAATATC GAAAAGGAGG TACTGTCCAG TTTAGCAAAT 
    GGCCAAGATT CTCATGCTTC TGGAACAAAC CCTGGCTTCA GAGTTGGAGA 
    GATCAGGCTC TCCAACAGGG ATATTTATTT CGGCACATTA TTGGGGAACA 
    CACCAGAGGG TTCAGGGAGG TATGTCTGGT CAGATGGTTG CACTTACGAT 
    GGTGAGTGGA GGAGAGGGAT GAGGCATGGG CAAGGAAAGA CAATGTGGCC 
    ATCTGGAGCC ACCTACGAGG GTGAGTACTC TGGTGGCTAC ATTTATGGTG 
    AAGGCACATA TACCGGGTCT GACAACATCG TCTACAAGGG AAGGTGGAAA 
    TTGAATCGTA AGCATGGACT TGGATGCCAG ACGTACCCTA ATGGAGACAT 
    GTTTGACGGT TCTTGGATTC AGGGAGAAAT AGAAGGCCAT GGCAAGTATA 
    CGTGGGCAAA TGGAAACACT TACGTTGGCA ATATGAAGAA TGGCAAGATG 
    TCTGGGAAGG GAACTCTTAC TTGGAAAAAT GGGGATTCAT ATGAAGGAAA 
    CTGGTTAGAT GGCATGATGC ACGGGTATGG AATCTATACA TGGAATGAGT 
    GTGGGTATTA TGTTGGTACT TGGACCAAGG GACTGAAGGA TGGGAAAGGC 
    ACATTCTATC CAAAAGGTTG CAGAGTTCCT GTTAATGATG AGCTCTACAT 
    CAATAATCTA AGAAACCGAG GTGTGCTGCC TGACATTAGA AGGCAGAATC 
    ACGGCTCACG CATCCTTCAC TCTTCTTCGG TTGACATGGG GAACATGAAG 
    GTTGGCTTAA CTCGGGAATC TTCAGGTCCT TCATCTAGAA GGAACTCAAG 
    TGAGCAACCT CATTCGAAAA ATGTATCCTT GGAAAGACGG TGGAGCCTTG 
    AGGTGGCCAT TGAAAAATTC ATTGGCCATG ACGCAACTGG AAGCTCTGGC 
    CTAGAAAGAT CTGAAAGCAT TAATGATTCT GATCTGCCTA TGCTGGAACG 
    GGAATATATG CAAGGTGTTC TAATCAGCGA GGTAGTACTT GACAGGAGTT 
    TTTCGGATTC GTCC

    Gene models with high sequence identity

    1. AT3G09920.3 [+] show detail - phosphatidyl inositol monophosphate 5 kinase
      E-value: 5e-100; Score: 362.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam MORN motif 0.026
    HMMPfam MORN motif 6.4e-08
    HMMPfam MORN motif 0.58
    HMMPfam MORN motif 6.3e-06
    HMMPfam MORN motif 1.4e-06
    HMMPfam MORN motif 1.8e-06
    HMMPfam MORN motif 2.3e-06
    HMMPfam MORN motif 0.00015
    HMMPanther PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE-REL 1e-41
    HMMPanther PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE REL 1e-41
    superfamily Histone H3 K4-specific methyltransferase SET7 2.5e-27
    superfamily Histone H3 K4-specific methyltransferase SET7 3e-15
    Coil coiled-coil 0
    HMMSmart MORN motif 0.44
    HMMSmart MORN motif 2.7e-07
    HMMSmart MORN motif 0.48
    HMMSmart MORN motif 0.32
    HMMSmart MORN motif 0.19
    HMMSmart MORN motif 0.0026
    HMMSmart MORN motif 3.5e-06
    HMMSmart MORN motif 0.47
    Gene3D no description 6.9e-11
    Gene3D no description 3.4e-06
    Gene3D no description 0.00017

    See the detailed result >

    AT3G09920.3

    Model type
    Protein coding
    Short Description
    phosphatidyl inositol monophosphate 5 kinase
    Computational Description
    phosphatidyl inositol monophosphate 5 kinase (PIP5K9); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: carbohydrate metabolic process, cellular amino acid metabolic process; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1).
    Link
    InterPro Scan - TAIR