K12825

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12825

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12825

Determination of introduced cDNA(s)

  • J023034G24 - Rice Full-length cDNAs - Original: J023034G24

    full reading [+] show sequence

    Nucleotide sequence: J023034G24 - full reading 
    GACGCTCTCT CCCACTCCGC CACTGCTCCA GCTCCCCCTC CCCGCAAGGC 
    GGCGGAGATC CCAAGGTCGT CGGGGGATGG CGGCGGTGGC GGCTACATCT 
    CCGGCGCTAA CCCTCGCTGT CGCGGCCGCG GTGATAGCGG CCGCGTGCCT 
    CCTCCTCTGC GCGGAGGCGG TGTGGCTGGA CTTGCCGCAG TCGGGGACCA 
    AGTGCGTGTC CGAGGAGATC CAGTCCAACG TGGTGGTGCT CGCCGACTAC 
    GCCCTCATGT ACGAGTCCCA CCCCTCCTCC CACCCCACCG TCGCCGTCAA 
    GGTTACATCA CCATATGGGA ACACCTTACA TCACAATGAA AATGCTACGG 
    TTGGTCAGTT CGCATTCACA ACTTCAGAAG CAGGAAACTA TCTTGCATGC 
    TTCTGGATAG ATAGCGCAGA GAAAGGGTCA GGAATATCTA TTAATCTTGA 
    TTGGAAGATT GGAATTGCAG CAAAGGATTG GGATGTTATC GCTAAGAAGG 
    AAAAAATTGA GGGTGTAGAA CTAGAGCTTA GAAAACTTGA AGTGGCAGTA 
    CAATCCATCC ATCAGAACAT GATATATCTC AAAGCAAGGG AAGCAGAGAT 
    GCGAACAGTG AGCGAGAAAA CAAACGCTAG GGTAGCCTGG TTCAGTATTT 
    TGTCACTAAG CGTCTGCATT GTGGTTTCAA TTTTGCAATT GTGGCACCTT 
    CAAGGGTACT TCCAGAAGAA GAAGCTCATC TAGGTTAGCT CGCTTGAGCT 
    GTACCGTGAC TCCAAAATTG CAAATGTTGT TACATTGGGG AAAACAGTTT 
    TGTCATGTTA GTTCGAACTT CACGCTAGCG AGGAGCTGCT TGTACTTTAT 
    GTAATTTAAC CATGGTTCAG TTTAGATGTG TTGTGCATTA TGATTGCAAA 
    TAGGTGATAA CTTAAATCTC CCTGGAATAT TTGATGCCTT CAGGACATAG 
    ATTACAAGAA ATTCATCGTC TTATAATGGG ATGCAAAAAT TGTGGCTTAT 
    GTGGTAGTGG GCGGTGGTTT TTCTTCCATT TGCTTTAGCT ATTACAGATG 
    TCATGTAAGT GTCATAGTAT GGTCCGATCC TTGTACCAGT AAACCGGCTT 
    AGATGGAAAC ACCGATATGA GAAGGCCAAT TATCT

    Gene models with high sequence identity

    1. AT1G09580.1 [+] show detail - emp24/gp25L/p24 family/GOLD family protein
      E-value: 2e-62; Score: 236.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther EMP24/GP25L-RELATED 4.4e-116
    HMMPanther COPII-COATED VESICLE MEMBRANE PROTEIN 4.4e-116
    HMMPfam emp24/gp25L/p24 3.8e-51
    ProfileScan GOLD 14.329
    Coil coiled-coil 0

    See the detailed result >

    AT1G09580.1

    Model type
    Protein coding
    Short Description
    emp24/gp25L/p24 family/GOLD family protein
    Computational Description
    emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G57620.1); Has 1762 Blast hits to 1760 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 806; Fungi - 509; Plants - 239; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR