K12831

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12831

Determination of introduced cDNA(s)

J023045I05 - Rice Full-length cDNAs - Original: J023045I05

full reading [+] show sequence

GACTCCTCTC CCCCGCCGCC GCCGTCCGAC CATCCGACCA CCGCCGCCGT 
CCCCCTCGAC GCCGACCACC CCTTCGGCCG AAGCCACCTC CACTACTTCC 
CGCCGCCATG GCGTCGGAGG AGGGGGAAGA AGCGAACGCC GCGTCGTCGG 
CGGAGGAGGT GGGGAGGAAG AAGCCGCCGC GGCACAAGGG GAAGCACGAC 
AAGCCGAAGC CGTGGGACGA CGACCCCAAC ATCGACCACT GGAAGATCGA 
GAAGTTCGAC CCCTCGTGGA ACGAGGGCGG CATGCTCGAA GTCAGCTCCT 
TCTCCACCCT CTTCCCCCAG TACCGAGAGA AGTACCTGCA GGAGGCGTGG 
CCGATTGTGA AGGGCGCGCT GAAGGAGTTT GGGGTCGCTT GCGAGCTCAA 
TCTGGTGGAA GGATCCATGA CCGTTTCGAC CACGCGCAAG ACCAGGGATC 
CCTACATTAT CGTTAAGGCC AAGGAGCTGA TAAAATTGTT GTCGAGGAGC 
GTCCCCGCTC CACAGGCGAT TAAAATACTC AACGATGAGA TGAGCTGTGA 
TATTATCAAG ATTGGTAGTA TTATACGGAA CAAGGAAAGA TTCGTTAAAA 
GGAGAGAACG TCTTCTGGGC CCTAATTTAT CTACTCTCAA GGCCATCGAG 
ATTTTGACTG GCTGCTACAT CTTAGTTCAG GGAAACACTG TTGCTGCTAT 
GGGTTCCTGG AAGGGATTGA AACAAGTCCG AAGGGTTGTG GAGGACTGCA 
TAAAGAACAT CAAGCACCCT GTGTACCACA TCAAGGAACT CCTAATTAAA 
CGTGAGCTGG CCAAAAATCC TGCGCTAGCC AATGAAAGCT GGGACAGGTT 
TCTCCCGAAG TTTAAGAAGA AAAATGTCAA ACAAAAGAAA CCGATAACAA 
AGGAGAAGAA GCCATACACA CCCTTTCCAC CTCCTCAGCA ACCTAGCAAG 
ATTGATCTTG AACTTGAGAG TGGTGAGTAT TTCATGAGTG ACAAAAAGAA 
GTCCGCAAAG AAATGGCAAG AGAAGCTGGA AAAGCAATCG GAGAAAGCTG 
AAGAGAACAA AAGAAAGAGA GAAGCTGCAT TTGTTCCTCC AAAGGAGGAC 
ACTGCAACTC CATACGAATC TGCCAAGTCT ACCAGCAACA ACGACGAGAT 
TGCTGATATG GCTAAGTCCC TAAAGAAGAA AGCAAAGGAA TTCAGAAAGA 
GTGAAGCACA GGAAAATGTG AGACTCGAGT CTTATGTTGC AAGTAATGAA 
GGGTCACGCC CAAAAAAGAA GCACAAATCG TCCAAGTCCA AGTAATCGCA 
ACCTGAATGA ACCATGACCC CCGGTTAGTG TGACAACTTT TTCTAGCCAA 
ATCATGCTAG CAGCATCCCA TTCAAAGTTC CTGATGGCGA TTGAACAAAA 
TTTGCGGCCT TTTGGCTCTC TGCTTGTTGT AAAAGTAGTT GTCATCTGTA 
TGGGTTGTGT AACTGTTTGT GCCCAATATG CCGTGGAGTA GCTCTGATCT 
GCTTGTCTCC TTGGGGTAGC TCTGATGGCT CGTGATGAGA GTTGAGACAG 
CTTCTCCATG TAGATCAGAG CTACAACGTG ATGTAGACAT GAGCATCTTC 
GCTGGTGCAG CAGTCTGAAC TGTCATGTCG TTGCCTTGCC TCTTTGTGAA 
AGTCACAAAG ACAATGCATC ATCGACAAAT TTACACCCAG CAACGGTCTC 
TGCCTCGTCG ATCGCCTATT TGCCTTTTCT ACCTAGAACT CAAATGACTG 
AAACTGAAAC TGAAAGCCAA TCAATCATAT ACTGAAAACC TGCTAGTTTG 
TTGCTCT

Gene models with high sequence identity

AT5G08420.1 [+] show detail - RNA-binding KH domain-containing protein
E-value: 3e-119; Score: 426.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
superfamily	Eukaryotic type KH-domain (KH-domain type I)	4.1e-17
Gene3D	no description	2.1e-06
HMMPanther	HIV-1 REV BINDING PROTEIN 2, 3	2.3e-196

See the detailed result >

AT5G08420.1

Model type: Protein coding
Short Description: RNA-binding KH domain-containing protein
Computational Description: RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087); Has 2263 Blast hits to 1799 proteins in 332 species: Archae - 149; Bacteria - 48; Metazoa - 634; Fungi - 309; Plants - 96; Viruses - 0; Other Eukaryotes - 1027 (source: NCBI BLink).
Link: InterPro Scan - TAIR