K12832

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12832

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12832

Determination of introduced cDNA(s)

  • J013084L13 - Rice Full-length cDNAs - Original: J013084L13

    full reading [+] show sequence

    Nucleotide sequence: J013084L13 - full reading 
    GCTCTGAAAC TTCGGCTGCT GACCAGTTTG TAGTTCAGGA GAACAAGGAG 
    GAGGAGGAAT GGGGTTTAGC TGGGGATGGC TGTGTGGACG GCGCAATGGG 
    CCATCGGGCT TCGGCGGGGC ATCCACTGCC GACGAGGTCA CCGCCGGCGT 
    CGACGCCAGC CGCCTGACGG TCGTCGTCAC AGGTGCAACA AATGGCATAG 
    GAAAGGAGAC AGCTAGGGTC CTTGCACTAA GGGGAGCAGA GGTGATCTTA 
    CCAGCAAGGA CACTGGAGAG TGGCATGAAG GTGAAACAGA GCCTTGCAGA 
    GGAAATCCCC AGCTCAAAGC TCCATGTCAT GGAGATGGAT CTTAGCTCCC 
    TCGACTCCGT TCGCAGCTTC GCAAAATCGT TCAACTCGTC TTATAGGCAT 
    CTGAACGTCC TCATAAATAA TGCAGGGGTA ATGTCCTGCC CTTTTGGACT 
    ATCCAAAGAT GGGATTGAGC TTCAATTTGC AACGAATCAT GTTGGGCATT 
    TCTTGCTGAC AAATCTCCTT CTCGACAAGA TGAAAGCCAC GGCTAAAGAG 
    ACTGGTTTGC AGGGCAGGAT CATAAACGTG TCTTCTATTT CGCATCGAGG 
    AAGCGATGGT TCATGCTTTG ATCTAGATAA GCTGAACGAC AAGTCGAAGT 
    ACCGTCCGTT CAAGGCATAT GGACATTCCA AATTAGCGAA TATTCTCCAT 
    GCAAATGAAC TATCCAGGCG TTTTCAGGAA GAAGGATGCA ATCTGACTGC 
    AAATTCCCTG CATCCTGGAG TAATCGCCAC CAACCTCCCT CGCCACATCC 
    TGACAAACAG TCTGATTATA TCAATCTTCT CAGTCATGAA ACCTTTTCTG 
    AAGAGCATAC CTCAGGGAGC TGCGACGAAC TGTTATCTAG CATTGCATCC 
    TGGATTGAAG GACGTGTCCG GCAAATACTT TGCCGACTGC AACGAAGCTA 
    CGCCGACGGC TGTTGCAAGA GATGCAGAGC TAGCAAAGAA GCTGTGGGAG 
    TTCAGTGAAG AACTTACCAG TGGGGATCAG AAGCTGAAGG AGAAGTGAAG 
    GTAGCGACCT GAACCTGAAG TCGGCGGCGA CATTGGAAGG AGCGCAGTGC 
    GCAGAGTTTG GTGGACTGGA GCTGGAGGGA TGCGACGCAA TGGAAGTACG 
    AAACCATGAA AGCAATGGCA TCGGTTTTAG GCTAGACTGA ATATGTCACT 
    GAAAATTTTG CTTGTCCTAA GTATACTATT AGTATATGTC TTGTTCTAAA 
    CTTGTTCGGT TGTTCCTTTA GGCAAGACTG AATATGTCTT GTTCTAAACT 
    ATTAGCTATG TGAGTGTGAC TATGTCATCC GATGACGATT GTACCCCTAC 
    ATTCAGGGGC GAATCCACAG GGTATAACAC TGTTCTAAAC TTTATAATCC 
    CATTGGTGT

    Gene models with high sequence identity

    1. AT5G02540.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 2e-97; Score: 353.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Short-chain dehydrogenase/reductase SDR 1.5e-18
    superfamily NAD(P)-binding domain 1.9e-47
    FPrintScan Glucose/ribitol dehydrogenase 1.1e-15
    FPrintScan Glucose/ribitol dehydrogenase 1.1e-15
    FPrintScan Glucose/ribitol dehydrogenase 1.1e-15
    FPrintScan Glucose/ribitol dehydrogenase 1.1e-15
    Gene3D NAD(P)-binding domain 2.8e-48
    HMMPanther RETINOL DEHYDROGENASE 5.8e-118
    HMMPanther Short-chain dehydrogenase/reductase SDR 5.8e-118

    See the detailed result >

    AT5G02540.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Computational Description
    NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G37540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR