K12837

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12837

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12837

Determination of introduced cDNA(s)

J023078C01 - Rice Full-length cDNAs - Original: J023078C01

full reading [+] show sequence

GGCTCGCGAG AGAGGAGCCA TGGCTGGAGC CTCGCCGTCG GCGCGCGCCG 
AGGTGGTCGT CCCGCCGGAA TGGGCGGCGG CTACCGCCAC CGCCGCCGCC 
GCCTCCTCCG AGCCCGCGCC ACCGGTCGTC GTCGTCTGCG GGCCCAAGAA 
CGCCGGCAAG TCCACCTTCT CCCGCCTCCT CCTCAACTCG CTGCTCCCCA 
GGTATGGGAG GGTGGGGTAT CTGGACACGG ATGTCGGGCA GCCGGAGTTC 
TCGCCGCCGG GATGCCTCTC GTTCCACGTC GTCGACGAAG CTCTCACAGA 
TTTGCTCAAC CCAACTCTGC GTGAGTGTGA AAGGTGTTGC TTCTTCGGTG 
ATATTTCTTC AAAGCGAGAT CCAGAAACAT ATCTGAATTG TCTATTTCAT 
TTGTATGACT ATTTTGTTGA AAAATATCGA TCTGGTGCCA GTGAACCTCT 
ACCTTTAATT GTCAACACTC CTGGATGGGT GAAAGGTGCT GGTTTTGATA 
TGCTGGTAGA GATGCTAAGG TATATCTGCC CCACAATTGT TGTTCAGATA 
CGCATCTCTG CGCAGAGCAA GAATCTCCCT GATGGAATGT TTTGGTTAGA 
TTGTGGGCAA ACAGGACCAA ACATGATCAA TATTGATGCT CCATTTCATG 
ATGCTTTGAA TAGATCGTTG TTAATCCAGA AAGATTCTTA TGGAATGCGT 
GAGCGCCGGC TTATAGAGTA CTTCAAGCAA TGTTTTCCAA GTGACATATC 
ACTGACAACA AATAAGGAGC TTGCCTATGG CCTAACTTCA CTTCCACCCT 
ATGAAGTATC AATTTCAGAT GTTATGGTTA TACATCTTCA TTGCCAGGTA 
CCTCCTAGTG AGGTATGGCA TAGTCTAAAT GCTACCATAG TTGGTTTGGC 
CATTAGCTGT GGCACGATCG AGGCAGGCCG TTCAATCCCT TGGTGTGCTG 
GTCTTGGTAT TATCAGAGGC ATCGATGTGC AAAGAGGCAT TTTATATGTA 
ATAACTCCTG TTCCTCTAGA GCATCTTCAA AGAGTTGATC TCTTGCTTCA 
GGGACTCATT GAGATCCCAA AGTCTCTTCT GCAGGTCCGA GGATGCGTCT 
CACCATACAT GCCAACGAAT GTGCTGCACA GGATTTCGGA GAGGGACATA 
AACACCTGAG TTGACGTCGA ACGCCCTTCT CCTTTGCCAC CACCGTTCGG 
GGAGATGATC CTGAACCTGT TCAGAACAGA GCAGAGCAGT TCTGACCCAC 
AGATGGAGAC TTGTAACCTG TGCAGTACTG CCATGCTTGT TTGTAGCCCT 
TGCTGGTGGA AACGATGATA TATCATTATC TGCAATTCGT TGGAGACATC 
GGAAAATCAA AATTTTGACC TTTTCTTGTC CTCTGCAAAA ATTGACCGTC 
AAAATTTAGT AATGTCAAAT ATTGGCGCAT GTTAGATTAC CAAAATTTCG 
TAGTGTTGGA ATGTGTAGGT GTAGCCTTAT CAAATGTTCA CATAGGGTTG 
GGTTGGTTTG AGATCTAAAT TGACCTTTTC AATTTTTGGC AATGCCAAAA 
TTTAGCAAGT TGTGGCATGA CTAATTTTGG GAAGGCAATG TTGTGTTTGG 
ATTGAAGTTA AAATAAGTTA ACTATTGAAA TGGCCTAAGA AAAGGCCTAT 
TTTCTTAGGC ATGTTAAGAT TTGGCTTCAA ACTAAATAGA CAATAAATAC 
TATTGAAATT G

Gene models with high sequence identity

AT5G11010.3 [+] show detail - Pre-mRNA cleavage complex II protein family
E-value: 9e-95; Score: 344.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CL	2.6e-14
superfamily	P-loop containing nucleoside triphosphate hyd	9.9e-09
superfamily	P-loop containing nucleoside triphosphate hyd	3.7e-06
HMMPfam	Clp1	5.8e-40
HMMPfam	MobB	2.5e-12

See the detailed result >

AT5G11010.3

Model type: Protein coding
Short Description: Pre-mRNA cleavage complex II protein family
Computational Description: Pre-mRNA cleavage complex II protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLP-similar protein 3 (TAIR:AT3G04680.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR