K12912

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12912

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12912

Determination of introduced cDNA(s)

  • J023080P13 - Rice Full-length cDNAs - Original: J023080P13

    full reading [+] show sequence

    Nucleotide sequence: J023080P13 - full reading 
    GTAGATTTTG GGGGAACAAG GAGAGAGAGA AGAGGAGAGA AGAGGCCATT 
    CTTCTCTTCT CCACCACCTA CACTCTCTCT CTCTCTCTCT CATCTCCTGC 
    CTTCTCTCTA GGATCGCCGC CATCCACCAC ATCCCACGCT TTTTACTGCC 
    GCACACATAA GAGCACAGGA GGAGGAGGAA GAAGAAGAGT AGAGAGAGAA 
    AGATAGAGAG AGGAGCAGGA GAAGCATTCG TTCATCCAGG AGAGAGAGAG 
    GCTTCAAGTT CTTGGTCTCC TGCTCTGCCA TGTCCATGGA TGAAGGGTAT 
    GGCCCTACCT GGGACAGCGA CGACGAGTAC GACAACTTCA TACGCAAGAT 
    GAACCCGCCA AGGATCGAGA TCGATAATGA TTCATGCAAC GACGCCACGA 
    TTGTCAGGGT AGACAGTGCA AATGAGTATG GGATTCTCCT TGAAGTAATC 
    CAAGTTCTGA TTGATCTGAA TCTTGTGATA AGTAAGGCGT ACATAACCTC 
    AGATGGTGGA TGGGTCATGG ATGTCTTTGA TATAACTGAC AAAGAAGGGC 
    AGAAGCTTAA AGATAAGGCT ACTATTGCGC GAATTGAAGA CTACATTTGT 
    AAGTCTTTGG GTGCAGATTC AAGATACATA CCTTCTCGCC GGAGATCAGT 
    AGATGTCGCT GCTTCGAGTG ATCACAATGT CATTGAGCTG ACAGGGACTG 
    ACCGGCCAGG CCTCCTCTCT GAAGTCAGTG CAGTTCTTGC AAGCCTCAAG 
    TGCAACGTTG TCAGCGCCGA GATCTGGACC CATAACACCA GGGCTGCCGC 
    CGTGATGCGA GTCACCGATG AGGGCACCGG ATCGGCCGTC ACGGACGCCG 
    ACAGGCTCGA GAGGATCAGG GATAGGCTGT CCTACCTTCT CCGGGGAGGC 
    AACCTCTCGC GCGGCGCGGC CATGGCGGTG TCGACGGGGA CCTGCAGCAC 
    GCACACCGAG AGGAGGCTGC ACCAGATGAT GCTGGATGAT GGCGACCATG 
    AGCAGCTCCA TCGGCATCCT CCGAATCAGT CCCAGAGGCC CAATGTGACG 
    GTGAGCAATT GGAATGACAA GGACTACTCG GTGGTCACCA TCCGATGCAA 
    GGACCGGCCG AAGCTTCTCT TCGACACGGT TTGCACCTTG ACAGACCTGC 
    ATTATGTTGT TTTCCATGCA AATATTGATG CCAAGGATAA TCAAGCTTAC 
    CAGGAATTCT ATGTGAGGCA TGTAAATGGA TCTCCAATGC ACACTGAAGC 
    TGACAGGTTG CGAGTCATCC AGTGCCTTGA AGCTGCTATT GAACGGAGGG 
    TGTCTGAGGG TGTGAAGCTT GAGCTCTGCA CAAATGACAA GGTCGGCCTC 
    CTGTCAGAGG TCACCCGAAT CTTCCGCGAG AACAGCCTGA CTGTCACAAG 
    AGCGGAGGTG AGCACGAGAG GAAGGATGGC TGTCAACACA TTCTATGTTC 
    GCGATTCCAC AGGAGGGACG GTTGATCAGA AGACAGTAGA CTCCATCAGG 
    CAAGCCATAG GCCAGAACAT TCAGGTGAAA GGCCAGCCTG AGCCATCAGA 
    GCCACAGAAG AAAGAGTCAC CCACATGGTT CCTCTTCGCC AACCTGTTTC 
    GACCGAGATC TCTCTACAGT TTCGGGATGT TCATGCGCTG ATCTCATGAG 
    CCGATCCCGA AAACCGCACT GAAAATTCTT AGCTGACGAA GAGGCCCAAG 
    AATTCAGGAA GTTACAGAGA GGGCCTTCAT TCTGTTCAAG ACTTACCAGT 
    GGAGTGGCGC AGGAATGGAA TAGTAGTGTA GGGGTTGTTT ATAGATCATC 
    ATCATTTGTA AATATACTCG AATTCGCCAT GTCCACATTG TACATATGTA 
    GATAAATCAT GTAAATATAA CTGTGGAAGA TATTGTTTTA TAAGAAATAT 
    GTTAGATT

    Gene models with high sequence identity

    1. AT1G69040.2 [+] show detail - ACT domain repeat 4
      E-value: 6e-138; Score: 488.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.9e-05
    HMMPfam Amino acid-binding ACT 6.5e-05
    HMMPfam Amino acid-binding ACT 5.2e-10
    HMMPfam Amino acid-binding ACT 1.4e-07
    superfamily ACT-like 8.1e-16
    superfamily ACT-like 3.9e-11
    superfamily ACT-like 1.4e-10
    superfamily ACT-like 0.00015

    See the detailed result >

    AT1G69040.2

    Model type
    Protein coding
    Short Description
    ACT domain repeat 4
    Curator Summary
    ACT-domain containing protein involved in feedback regulation of amino acid metabolism
    Computational Description
    ACT domain repeat 4 (ACR4); FUNCTIONS IN: amino acid binding; INVOLVED IN: regulation of cellular amino acid metabolic process, response to cytokinin stimulus; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain repeat 5 (TAIR:AT2G03730.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR