K12914

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12914

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12914

Determination of introduced cDNA(s)

  • J013113P22 - Rice Full-length cDNAs - Original: J013113P22

    full reading [+] show sequence

    Nucleotide sequence: J013113P22 - full reading 
    GCGTGATCGC CAGTAACGCC CAGGAGCTTC GAGAGAATTC CACACCATTC 
    CCCCCTACCA CCACGCGGCG CATCATCACA ATACACAGCC TCTGCTTCCC 
    CCGGCAACCC AACCGATTCG CGCTCACGCC ACCTGCAATC CGCGACCAGA 
    CGCGCGGGCC GTTGAGATCA ACAAACACAT CGCACGCGAC GCCGCGTGAG 
    CCCGTACGAT CGCCCCCTCC CGCGCCGCGC CTCCGCACTC TGGTTGGTTG 
    CCTCGCCGGC GATGTCGACG CAGTCCATCT CGCCCGCCGC GGCGGCCGCG 
    TCCGCGCAGT ACTCGTACCC GGCTGCCGCG GCGGCGGCGG TCCCGTCCTA 
    CTTCCCCGTC CCGTTCCACC TCCAGAACGT GCAGCAGCCC GCCACCTGGC 
    CAGCGGCGCC CGCGGCGTAC AACGCCGTCT ACCCCATGCC CCAAGTCCAG 
    CAGGTTCAGC AACTGTTCCA GAAAGATTCA CAGATAATCA CTCCTGAAGC 
    TCTAGCTACT GTGAAAGCTG CTATTGCAAA TAGTGAGAAA GACAAGAAGA 
    TTGAAGCAAA CAAAAAGGCA GTACCTCGAA AGGCAGCTGG GCAATCTTGG 
    GAGGATCCAA CTTTGGCTGA CTGGCCCGAA ATGTGACTTT CCCCTCGTCT 
    GAACTTGTCT GAATGTCTGT TATCCTCACG TCAACAGACC ATCAAACACC 
    TTCAATTCCC CAGGCAAGAT CTAATGTTCG ATCTATGTAT TCTAATAAGA 
    CAAACTTTCC CCTGTTTCCT TCTGTTAAAG GTGGCCGAGG ATGTGATATG 
    TAGCCCAACA GGTTTCAGAG TTGATGCCTG TCTCGTGGAA TTAGGTGGGC 
    TTTGCAGATG ATATAGTAAA CATTTCCTGT GCCTTTGCCA TTAGTTTACA 
    TGCGTTGTCA TCTCGTTTTT GCATGCCTAA TTTGATTATA TGAATATGAT 
    ATTTGAAAAT TTTTCATAGA GTTATACAGA GAAATATGTT CTACTGCGCA 
    TTTTGGTGCA AACTATTCCA CTTATATTTT TTATTCTAAT GTTCCTGGTG 
    TAATTTTGAT GATACACTTA CCATCCTAGG ATTAATATGG TGATAGATTC 
    TTGTTGGGGA CTGTCCAAAT AAAGATCTTC CCTTATATAT ATTGTTATCA 
    ACAAAGCATG AACATTATTA AAAAGTTTTG TTCCATATAT TAGTGATTGC 
    ATAAAGGATG AGGCTTTTAG CCAATCAACT TACTTTCCAC AATAATCTGA 
    TTTTATCAAT TCGTCATGTT GCGTTCCTGT TAGTCAATAT AACATGTACT 
    GTAGCTCAGC TCTTGCAGAT TGTTTGTCAT CCTTATTTTT AGATTTTTGT 
    ACAATTAAAT ATATTAACTG TATTTAGCAT TTTTGGCTAC AGTTTTCTAG 
    TTTTACATGC TTAGCTGACG TATCAGATAC CACTATTTAG TTGTAATACT 
    TCATGATGTG TCATCCATCA TGTAACATGT CTAAGATGTA GCAGCCTTGC 
    TGAGTTGATG TATAATAATT TAGCAGCAGC ATGCAATGTT GGCAGCGTTA 
    AATACTTATG ATGCTATATT GTCTTTGGAA TTTACTAGCA CCTGACATGA 
    GTATGTATTT GTGCTGTCAT GTTTCGTCAT AATTTGATAG AAGCAAATAT 
    ATTATTCTAC TTTAGTCTGT AGCAATGACC AAAAATGGTG CTATAACAGT 
    TGTTTTTCTC AAATGTGCCC TCTTTTTATT TCAAAGCATT CACACTTACA 
    TCTGACAAAT TTTCCCCATC CACAGATGAT TTTCGGTTGT TTTGTGGCGA 
    TCTTGGAAAC GAAGTGAACG ATGTTGTTCT TACAAAGGCA TTTTCAAAAT 
    ATCCATCCTT CAACATGGCT AGGGTTATTA GGGACAAATG GACTGGTAAA 
    ACTAGGGGCT ATGCCTTTGT TAGTTTTGCT AATGCGTCGG ATCTTGCTGC 
    AGCATTGAAA GAGATGAATG GTAAATATGT TGGAAACAGG CCAATCAAAC 
    TACGCAAGAG CACATGGAAG AACAGAATCG ACTACGAGGC ATTACAGAAG 
    CCGAAGACTC AACCACAGAA GAAGTTCAAA GCGCAGAAAA AAAGCATTCT 
    ACACAAGTGA AGTAAATTCA CTCTCTAGAG AGTGATCCCT AGTGTCATGT 
    TGCACATGAG TCCTTTGTTG CTCCTGCAAT AAACGACGTT AAAGCCTTCA 
    GCGCCCGGCG GTGCGCTTGT CACGTTTGGC CTAGTGATTG TTCTAGGGTA 
    GTATGGCTCG TCCCAATTTG TAATGGAAAT TTAGGTGTAA ATATTCTAAT 
    GACTGGTACC GTTGTGAACG GTACGAAGTT CTCTTATGAT GAACTCCTGT 
    AGCGTGGAGC AATTCGATTA TAAATATTTT CTTC

    Gene models with high sequence identity

    1. AT3G04500.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 6e-37; Score: 153.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 15.306
    HMMPfam RNA recognition motif, RNP-1 1.1e-17
    superfamily RNA-binding domain, RBD 2.6e-20
    HMMPanther RNA recognition motif-related 1.1e-40
    HMMPanther RNA-BINDING PROTEIN 1.1e-40
    Gene3D Nucleotide-binding, alpha-beta plait 7.9e-20
    HMMSmart RNA recognition motif, RNP-1 3e-18

    See the detailed result >

    AT3G04500.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition motif-related (InterPro:IPR015464); BEST Arabidopsis thaliana protein match is: oligouridylate binding protein 1B (TAIR:AT1G17370.1); Has 13292 Blast hits to 10995 proteins in 692 species: Archae - 0; Bacteria - 989; Metazoa - 6848; Fungi - 1697; Plants - 2705; Viruses - 0; Other Eukaryotes - 1053 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR