K12915

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12915

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12915

Determination of introduced cDNA(s)

  • J033120E14 - Rice Full-length cDNAs - Original: J033120E14

    full reading [+] show sequence

    Nucleotide sequence: J033120E14 - full reading
    GTAAGAGTTG GGCGCGAGAG CACCGACGAC CCAACAACAC AAGACGAAGC 
    GAGCGACGAG ACGACCTAAC CCCAAAGCGA AAAAAGTTGC TGCATCCTTA
    GCGCGCAAGC GAAAGCGAGA GGGAGCTCGC GCGCGCGCGA GGGATCGATG
    GATCGACCCC AGGTAGTTAC CGAGAACTAT GCCAATCCTG TGACGTGCCT
    CTTTCATGTG CTCTTCAAGG CTGGGGCGCT GGTGTTCTAC ATCTTGTTTT
    CGCTCTTCGT GAAGAGCTTC GTCATCATAT TCGTCATCAC CGTGTTCCTG
    GCGGCGCTCG ACTTCTGGGT GGTGAAGAAT GTGAGTGGCA GGATATTGGT
    CGGGATGCGG TGGTGGAATG AGATCGACGA CGAGGGCAAC AGCGTGTGGA
    AGTTTGAGTG CCTCGATGGG GAGGCTCTTG CTCGGATGAA CAAAAAGGAC
    TCGTGGCTGT TCTGGTGGAC TCTTTACTTG ACTGCTGCTG CATGGATCAT
    TCTTGGGATA TTTTCACTTA TCAGACTTGA AGCTGACTAC CTTCTTGTTG
    TTGGAGTTTG CTTGACTCTA AGCCTTGCAA ACATTGTTGG GTTCACCAGA
    TGCAACAAAG ATGCCAAGAA GAATATCCGG GGTTACTTTG AAGGTCATGC
    TCAAAATGCG ATCACATCCC GCATCACATC CACCCTGCAA TCAGCATTTG
    GAGTAATCTA AAATCCGAGC TCCAAACAGC AAGGCCCTTT TCGAATACAA
    CCATGTAAAA TCTGTCAAAA GGATTAGCGT GCATTATCCC ATTTCCATAC
    ATTTTTGTTG ACCCAATACA CCCAGTAGGT TGATTTTGAT TGGAAAGACA
    GAGAACACCT TGTTAGTACT ACTGCCTTCC AAAGGAGTAA AAAAGAAGTT
    TTTAGCCGAG AATATGTCTT GAGTCTGAGT GTACCCTTTA GGGATTTTGA
    CCCTGGAACC TGTCTTCCAA TGCAGCTTCT TGTTAATTCC ATATATTATT
    AATCATTTGC TGTGCTGTAT CTTAACGACA ATTTTCTGTA ATTTTATGCA
    TTCTCGCAAA ATGCCCGTAC ATGGTTACGT GATTG

    Gene models with high sequence identity

    1. AT1G09330.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 2e-74; Score: 276.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF846, eukaryotic 5.6e-47
    Coil coiled-coil 0
    HMMPanther Protein of unknown function DUF846, eukaryotic 3e-53

    See the detailed result >

    AT1G09330.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR