K12925

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12925

Determination of introduced cDNA(s)

J033032G15 - Rice Full-length cDNAs - Original: J033032G15

full reading [+] show sequence

GTAGGACCCA TTGGATTCGC CATGGCGTCG TCGCCGCACC AAGTTGTAGC 
TCCCCAACCC CAATCCCAAG CCCAAGCAGG TGGCGGCGGC GGCGGCGGTG 
GTGGCGGGAC GGCCGAGCAG TTCTGGTCGC TGCTGGACAA GGCAGACCGG 
CGCTTCGCCC GCGTGCGCGA CCTCCCCCTC TTCGGCCGCC GGGAGCCCGA 
TGAATACGGC AAGGTCTTCC GCATCTACAC CCAGCTGTGG CGCATGCAGC 
AGGAGCACCG TCACCACCTC CTCGACGCCG GGCTCCGCCG ATGGCAGGTC 
GGTGAGATCG CCGCCCGCAT CGCTCACCTC TACTACTCCC AGTACCAGCG 
CACCTCGGAC ACCGCCCTCC TCTCCGAGGC CTTCGTCTTC TACCACGCCG 
TCCTCGACCG CGGCTACTTC CTCGCCGACG CCGCCGACCA TCTCTTTGCC 
CCCACCAAGC ACCTCCGCTT CCTCGCCAGG TTCCTCCTCG TTGCGCTTCT 
ACTCGCCAGG CGCGCCGACA CTGTCCCTCG CCTCACCACC CACATCCGCA 
CGCTCCTCGA CGACTCCAAG AAGACCCTCC AAGAAGCCGA CTACAAGGAG 
TGGAAGCACG TCGTCCAAGA AATCGCGAGG TTTCTCAGAG CTGACTCCCC 
CTTTATCAAC ATGAGACCAC TCAGGTACAG CTACGCATTT GATCCTCCCC 
CTGATACTCT TCCTACCGTC CCACCTACTG TCAAGAAGCG AGGTCTGGTC 
TTAAATGATG CCATGCTATG CAGCTACTAT CAAAACGAGA TCAAATTTAC 
AGACCTCACC ATAGATGTTT TCAGAATGCT TCAATGCCTC GAATGGGAAC 
CATGCGGTTC TTTTGCACTA ACCAATGGTT ACAGTACCCG CGATGAAAGT 
GGACAAAATC ATCCCAATCT CTTAAAAGAT CTGAGAGATG CTGCGCTGCC 
TCCAAACCCA CTTAAAACAA TTCTCTATCG TCCCTCAGTG ACTCATTTCC 
TAACAGTCCT TGCCACCAAA TGTGAGGAGC TCCCGTCAAA TGGTATGATG 
TTAATATACC TTTCAGCTGC AGGCGAGGTG GGATCTTCTG GATTTTGCCC 
TGATACAAAT GAGATGGTTG TGAGCAGCTT GAATAAGTTT GATATATCTA 
ATACTAGTAC CATCAATGTA AATGAAGACA ATGGACCTCG TCTATGGCTA 
GGCTGCCGTG AAGGTGAAGG TTCAAACTGT ATATACCCTT GTGATCTGAT 
TCCATTTACA AGAAGACCAC TCTTTTTGGT GATCGACAGC AATGCCAGCT 
ATTCATTCAA GTCAATTCAT GGGTTTGAAA AAGGGGAGAC AACGGCCATG 
TTACTTTCTC CAAGTTGCCG ATCTTCCTCG GCAGGATTCA GTGGGGATTC 
TGTACGGCAG ATTGGCAGTC AATTTACTAT GTTTCTCACA GCTCCATTGC 
AAGCTTTCTG CCATCTGATT GGCAATAATG GGGTCGACAT TGATAGGGAT 
ACCTATAACA AAGCTGAAGA GTTACTATCA TTGTCCTTAA ATGAATGGGC 
CACTACTTTG GTTGCATCAT CTTCACTTCA TCCTGTTTGG GTTGAAGTTT 
TAGGCGATCC ACTCTTGAGG CGGCTTCTTC TCAGGTTTAT ATTCTGCAGA 
GCTGCGCATT CGATCTTCAA ACCTACGTAC CATAAGGTGG ACTTCCTCCC 
AACTTGCACA CCTCCTTTGC CAGAGTCGGT TGATGCAGAG AGCATGCTTT 
CCCAATGCTG CCTGTTGCGA GTTGCATCTT TCTTTGGCGC CACCAACCAA 
TTCTCATTTT CTGAGGTAAC CACATGGCCT GAGGTTGATG TTGAGGAGAC 
TGCTGTCGTC AACCCCTCGA TCTAGCGGTA CCAACTGTGA CTCTTGCGCA 
TCACAATATT TAGTTTCTAC CTATCAAAAG ATGAAGAGAT CCATTGTAAT 
ACCTTAATGT GGTGTGTGTA CAGCCAAATT TGCAATACCC TATTTATCGT 
CGTGCTAAAA TTTCCGTTAC TGGCCCCGCC TCCTGTAGCC CTCGAGGCCA 
AGCGTCTTTG AGCACCGAAT GATCTGACAT TGGACGAACA AGATTACAGA 
CATATGGACA AAATATGTGG AGACATTAAT TCATACCATA ATTCACATTC 
CC

Gene models with high sequence identity

AT3G03570.1 [+] show detail - Protein of unknown function (DUF3550/UPF0682)
E-value: 5e-131; Score: 465.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SUBFAMILY NOT NAMED	1.3e-193
HMMPanther	FAMILY NOT NAMED	1.3e-193
HMMPfam	DUF3550	4.1e-221
HMMPIR	Uncharacterised conserved protein UCP013022	0

See the detailed result >

AT3G03570.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF3550/UPF0682)
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP013022 (InterPro:IPR016607); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3550/UPF0682) (TAIR:AT4G40050.1); Has 215 Blast hits to 210 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link: InterPro Scan - TAIR