K12927

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12927

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12927

Determination of introduced cDNA(s)

  • J023095J08 - Rice Full-length cDNAs - Original: J023095J08

    full reading [+] show sequence

    Nucleotide sequence: J023095J08 - full reading 
    GAACCGACCG ACCTTCCTGG TGGTGGATGT TCTAGCCAAG AACCCTAAAA 
    AAAAAATTCC CCATCTCCTC CCAATCTGAT TCCTCTCGAG ACGGCGGATC 
    CGAGCAATCT CTCCGGCGGA GGCGGCGGCG GCGGCGGCTG ACGAGGGAAG 
    ATGAATCCTC TGACGCAGGT GAAGAGGACG CAGGTAATCA ACCAGAAGGA 
    AGCGCTTCTG GGCATCGGCG AGGACGGGTC GTGGCACGCC AAGTTCAAGG 
    ACTCCGCCTA CGTCTTCGTC GGCGGCATCC CCTACGACCT CACCGAGGGC 
    GACCTCCTCG CCGTGTTCGC GCAGTACGGC GAGGTGGTCG ATGTGAACCT 
    CGTGCGCGAC AAGGGCACCG GAAAATCCAA GGGATTTGCG TTTCTTGCGT 
    ACGAGGACCA GAGGAGCACG ATTCTTGCTG TTGATAATTT GAATGGAGCT 
    AAAGTTCTTG GGAGGATTGT AAGAGTTGAT CATGTGAGCA AATACAAGAA 
    AAAGGAGGAG GAGGATGAGG AGGAGCTGCA GAAGAAGAGG GAGGCCCGTG 
    GCGTGTGCTA CGCGTTCCAG AAAGGCGAAT GCAACCGTGG AGCTTCCTGC 
    AGATATTCCC ATGATGAGCA GAGGAATGCA AACACTGGTT GGGGTTCTAA 
    GGAGGAGAGC AAAGCAAGAT GGGAGCATGA CAGACACCAT GAGCCACCGA 
    TGAGCCACAA GAAGTTCCCT TCGAGTGCTG GGGAACAAAG GTTCCCTGAC 
    AGAGCTAAAG AGGAGAACAA ATCAACTGGC AGGGAAGGGC AGTCCTCAAG 
    ATCGGAGGCA TACAAAGACC ATGATTCCAG GCTTAGGCAT AGTGATAGAG 
    GTTCAAAAGA TCATGACAGG TATAGGCATG ATAGATCACC TGAGAGATCA 
    AGAGGTGATA GGCAGAGAAA CAATGACAGA TATGCCCAAG GAAGAGATGA 
    AAAATCAGAA AGGTACAGAT CTGAAGTGAA ACATGATGAA GGAGACCAGA 
    AGCGATCAAG GCGGGACACT GATTCTAGTG GACATTATGA AAGGAGGGGT 
    AACGAAGATT CAGAAAGGTA CAGGAAATCA CGGAGATAAA ATTTGGATTT 
    GTTGTTGCTT CAGACGTTGT TCTGATCTGT TCGATGTTTG TTCTTGTACG 
    AGATGGATAA GATTTTTGTT TGATCCTTGG GTCTGATATT AGTCTAATAG 
    ATGCCATAGA TTACATTTGA GATGATTTTG

    Gene models with high sequence identity

    1. AT3G47120.1 [+] show detail - RNA recognition motif (RRM)-containing protein
      E-value: 2e-72; Score: 270.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Nucleotide-binding, alpha-beta plait 1.6e-26
    Coil coiled-coil 0
    HMMSmart RNA recognition motif, RNP-1 6e-25
    HMMSmart Zinc finger, CCCH-type 9.2e-05
    superfamily RNA-binding domain, RBD 1.1e-27
    ProfileScan RNA recognition motif, RNP-1 19.161
    ProfileScan Zinc finger, CCCH-type 14.802
    HMMPanther RNA RECOGNITION MOTIF CONTAINING PROTEIN 1.9e-56
    HMMPanther RNA-BINDING PROTEIN 1.9e-56
    HMMPfam RNA recognition motif, RNP-1 9.5e-21
    HMMPfam Zinc finger, CCCH-type 7.3e-05

    See the detailed result >

    AT3G47120.1

    Model type
    Protein coding
    Short Description
    RNA recognition motif (RRM)-containing protein
    Computational Description
    RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 3 (TAIR:AT5G61030.1); Has 201898 Blast hits to 124021 proteins in 4668 species: Archae - 159; Bacteria - 19385; Metazoa - 64482; Fungi - 8819; Plants - 85595; Viruses - 264; Other Eukaryotes - 23194 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR